Gm15523 Gene Detail

Summary

• Symbol
  Gm15523
• Name
  predicted gene 15523

• Feature Type
  lncRNA gene
• IDs
  MGI:3782970
  NCBI Gene: 102632708
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr12:103303165-103314316 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 52.91 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782970	lncRNA gene	Chr12:103303132-103315266 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003161	antisense lncRNA gene	Chr12:105015639-105026963 (+)
A/J	MGP_AJ_G0003137	antisense lncRNA gene	Chr12:100978047-100988952 (+)
AKR/J	MGP_AKRJ_G0003117	antisense lncRNA gene	Chr12:103824798-103835588 (+)
BALB/cJ	MGP_BALBcJ_G0003124	antisense lncRNA gene	Chr12:101333623-101344745 (+)
C3H/HeJ	MGP_C3HHeJ_G0003080	antisense lncRNA gene	Chr12:104316259-104328490 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003267	antisense lncRNA gene	Chr12:108270822-108290241 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002800	antisense lncRNA gene	Chr12:98018694-98029879 (+)
CAST/EiJ	MGP_CASTEiJ_G0003049	antisense lncRNA gene	Chr12:99168389-99181936 (+)
CBA/J	MGP_CBAJ_G0003077	antisense lncRNA gene	Chr12:112300027-112315051 (+)
DBA/2J	MGP_DBA2J_G0003082	antisense lncRNA gene	Chr12:100497347-100508829 (+)
FVB/NJ	MGP_FVBNJ_G0003102	antisense lncRNA gene	Chr12:99232657-99244362 (+)
LP/J	MGP_LPJ_G0003157	antisense lncRNA gene	Chr12:104862588-104874974 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003091	antisense lncRNA gene	Chr12:115755172-115767340 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003271	antisense lncRNA gene	Chr12:103362535-103374633 (+)
PWK/PhJ	MGP_PWKPhJ_G0003007	antisense lncRNA gene	Chr12:95059923-95071609 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002951	antisense lncRNA gene	Chr12:97562101-97575212 (+)
WSB/EiJ	MGP_WSBEiJ_G0003080	antisense lncRNA gene	Chr12:104247623-104258444 (+)

Homology

• Gene Tree
  Gm15523
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15523
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000090185 (Evidence)
• NCBI Gene
  102632708

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090185	Ensembl Gene Model | MGI Sequence Detail	11152	C57BL/6J
transcript	ENSMUST00000160463	Ensembl | MGI Sequence Detail	439	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15523:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114800	Chr12:103303114-103303141 (+)	-37 bp
Tssr114801	Chr12:103303147-103303158 (+)	-12 bp
Tssr114802	Chr12:103303371-103303380 (+)	211 bp
Tssr114803	Chr12:103307781-103307813 (+)	4,632 bp
Tssr114804	Chr12:103312501-103312518 (+)	9,345 bp
Tssr114805	Chr12:103313026-103313053 (+)	9,875 bp