Gm15522 Gene Detail

Summary

• Symbol
  Gm15522
• Name
  predicted gene 15522

• Feature Type
  lncRNA gene
• IDs
  MGI:3782969
  NCBI Gene: 108169039
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:34808038-34809820 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 17.91 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782969	lncRNA gene	Chr5:34808009-34810080 (+)
129S1/SvImJ	ENSMUSG00200032582	lncRNA gene	Chr5:30277116-30278875 (+)
A/J	ENSMUSG00195049555	lncRNA gene	Chr5:29748225-29749984 (+)
AKR/J	ENSMUSG00220009200	lncRNA gene	Chr5:29768605-29770364 (+)
BALB/cJ	ENSMUSG00180039916	lncRNA gene	Chr5:29551141-29552900 (+)
C3H/HeJ	ENSMUSG00175020250	lncRNA gene	Chr5:31530691-31532450 (+)
C57BL/6NJ	ENSMUSG00215006525	lncRNA gene	Chr5:30274340-30276099 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003654	antisense lncRNA gene	Chr5:29592008-29593685 (+)
CAST/EiJ	ENSTCUG00005025494	lncRNA gene	Chr5:29746153-29747894 (+)
CBA/J	ENSMUSG00210005553	lncRNA gene	Chr5:30499543-30501302 (+)
DBA/2J	ENSMUSG00185017899	lncRNA gene	Chr5:32369026-32370785 (+)
FVB/NJ	ENSMUSG00205041795	lncRNA gene	Chr5:29251376-29253136 (+)
JF1/MsJ	ENSUMUG00000054370	lncRNA gene	Chr5:36964450-36966208 (+)
LP/J	ENSMUSG00230048870	lncRNA gene	Chr5:36980776-36982535 (+)
NOD/ShiLtJ	ENSMUSG00190017128	lncRNA gene	Chr5:29533430-29535190 (+)
NZO/HlLtJ	ENSMUSG00225018503	lncRNA gene	Chr5:42187018-42188777 (+)
PWK/PhJ	ENSLUMG00010049287	lncRNA gene	Chr5:29661916-29663656 (+)
SPRET/EiJ	ENSMSPG00010039206	lncRNA gene	Chr5:30851109-30852852 (+)
WSB/EiJ	ENSIUOG00005018620	lncRNA gene	Chr5:32459898-32461657 (+)

Homology

• Gene Tree
  Gm15522
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  5
• Spontaneous
  1
• Genomic Mutations
  9 involving Gm15522
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085166 (Evidence)
• NCBI Gene
  108169039

Representative Sequences			Length	Strain/Species
genomic	108169039	NCBI Gene Model | MGI Sequence Detail	1783	C57BL/6J
transcript	NR_168516	RefSeq | MGI Sequence Detail	808	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 31

  Diseases 1

  Phenotypes 23
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm15522:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45896	Chr5:34808031-34808067 (+)	11 bp