Gm15511 Gene Detail

Summary

• Symbol
  Gm15511
• Name
  predicted gene 15511

• Feature Type
  lncRNA gene
• IDs
  MGI:3782959
  NCBI Gene: 102642202
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:69256171-69271529 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 38.58 cM

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782959	lncRNA gene	Chr9:69256171-69271529 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004641	antisense lncRNA gene	Chr9:69340001-69355345 (-)
A/J	MGP_AJ_G0004622	antisense lncRNA gene	Chr9:66956110-66971439 (-)
AKR/J	MGP_AKRJ_G0004605	antisense lncRNA gene	Chr9:68541683-68558665 (-)
BALB/cJ	MGP_BALBcJ_G0004606	antisense lncRNA gene	Chr9:66683729-66699459 (-)
C3H/HeJ	MGP_C3HHeJ_G0004555	antisense lncRNA gene	Chr9:69051437-69067213 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004756	antisense lncRNA gene	Chr9:71195138-71210383 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004207	antisense lncRNA gene	Chr9:66525209-66540482 (-)
CAST/EiJ	MGP_CASTEiJ_G0004513	antisense lncRNA gene	Chr9:69298813-69313879 (-)
CBA/J	MGP_CBAJ_G0004549	antisense lncRNA gene	Chr9:73694460-73714186 (-)
DBA/2J	MGP_DBA2J_G0004564	antisense lncRNA gene	Chr9:66710713-66726328 (-)
FVB/NJ	MGP_FVBNJ_G0004582	antisense lncRNA gene	Chr9:66026571-66041765 (-)
LP/J	MGP_LPJ_G0004645	antisense lncRNA gene	Chr9:69602437-69618154 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004570	antisense lncRNA gene	Chr9:74810774-74827058 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004755	antisense lncRNA gene	Chr9:68680073-68696331 (-)
PWK/PhJ	MGP_PWKPhJ_G0004466	antisense lncRNA gene	Chr9:66922288-66937715 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004406	antisense lncRNA gene	Chr9:68978231-68994595 (-)
WSB/EiJ	MGP_WSBEiJ_G0004554	antisense lncRNA gene	Chr9:68571976-68589368 (-)

Homology

• Gene Tree
  Gm15511
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15511
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086648 (Evidence)
• NCBI Gene
  102642202

Representative Sequences			Length	Strain/Species
genomic	102642202	NCBI Gene Model | MGI Sequence Detail	15359	C57BL/6J
transcript	NR_136934	RefSeq | MGI Sequence Detail	557	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15511:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90372	Chr9:69257007-69257037 (-)	14,507 bp