Gm15491 Gene Detail

Summary

• Symbol
  Gm15491
• Name
  predicted gene 15491

• Feature Type
  lncRNA gene
• IDs
  MGI:3782937
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:45737627-45740812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 38.75 cM

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782937	lncRNA gene	Chr19:45737627-45740812 (+)
129S1/SvImJ	ENSMUSG00200021604	lncRNA gene	Chr19:42437115-42439937 (+)
A/J	ENSMUSG00195018262	lncRNA gene	Chr19:42572046-42574860 (+)
AKR/J	ENSMUSG00220019507	lncRNA gene	Chr19:42371535-42374345 (+)
BALB/cJ	ENSMUSG00180020898	lncRNA gene	Chr19:42824344-42827170 (+)
C3H/HeJ	ENSMUSG00175006459	lncRNA gene	Chr19:42366157-42368967 (+)
C57BL/6NJ	ENSMUSG00215004907	lncRNA gene	Chr19:42434806-42437626 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003101	antisense lncRNA gene	Chr19:42398180-42401042 (+)
CAST/EiJ	ENSTCUG00005016789	lncRNA gene	Chr19:42010929-42013747 (+)
CBA/J	ENSMUSG00210019476	lncRNA gene	Chr19:42445746-42448559 (+)
DBA/2J	ENSMUSG00185009484	lncRNA gene	Chr19:42947851-42950663 (+)
FVB/NJ	ENSMUSG00205036869	lncRNA gene	Chr19:41860793-41863610 (+)
JF1/MsJ	ENSUMUG00000047101	lncRNA gene	Chr19:43091126-43093944 (+)
LP/J	ENSMUSG00230025656	lncRNA gene	Chr19:43706839-43709653 (+)
NOD/ShiLtJ	ENSMUSG00190005647	lncRNA gene	Chr19:42308990-42311801 (+)
NZO/HlLtJ	ENSMUSG00225044526	lncRNA gene	Chr19:47300697-47303508 (+)
PWK/PhJ	ENSLUMG00010001330	lncRNA gene	Chr19:42257153-42259970 (+)
SPRET/EiJ	ENSMSPG00010008143	lncRNA gene	Chr19:42001362-42004195 (+)
WSB/EiJ	ENSIUOG00005006843	lncRNA gene	Chr19:41809179-41811997 (+)

Homology

• Gene Tree
  Gm15491
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  3
• Targeted
  1
• Genomic Mutations
  1 involving Gm15491
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000087367 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087367	Ensembl Gene Model | MGI Sequence Detail	3186	C57BL/6J
transcript	ENSMUST00000133963	Ensembl | MGI Sequence Detail	1130	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42

TSS for Gm15491:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156698	Chr19:45737638-45737667 (+)	26 bp
Tssr156699	Chr19:45738047-45738070 (+)	432 bp