Gm4673 Gene Detail

Summary

• Symbol
  Gm4673
• Name
  predicted gene 4673

• Feature Type
  lncRNA gene
• IDs
  MGI:3782854
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:30656334-30661044 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782854	lncRNA gene	Chr7:30656334-30661044 (+)
129S1/SvImJ	ENSMUSG00200025986	lncRNA gene	Chr7:20425348-20430063 (+)
A/J	ENSMUSG00195050903	lncRNA gene	Chr7:23101367-23106080 (+)
AKR/J	ENSMUSG00220053507	lncRNA gene	Chr7:21371865-21376571 (-)
BALB/cJ	ENSMUSG00180024898	lncRNA gene	Chr7:21160857-21165569 (+)
C3H/HeJ	ENSMUSG00175042676	lncRNA gene	Chr7:22245435-22250145 (+)
C57BL/6NJ	ENSMUSG00215029177	lncRNA gene	Chr7:20347635-20352345 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004007	antisense lncRNA gene	Chr7:30158381-30162999 (+)
CAST/EiJ	ENSTCUG00005049507	lncRNA gene	Chr7:22133134-22137851 (+)
CBA/J	ENSMUSG00210026981	lncRNA gene	Chr7:21408042-21412752 (+)
DBA/2J	ENSMUSG00185054038	lncRNA gene	Chr7:24483239-24487971 (+)
FVB/NJ	ENSMUSG00205025821	lncRNA gene	Chr7:21157517-21162228 (+)
JF1/MsJ	ENSUMUG00000057412	lncRNA gene	Chr7:28924672-28929403 (+)
LP/J	ENSMUSG00230053944	lncRNA gene	Chr7:29658482-29663194 (+)
NOD/ShiLtJ	ENSMUSG00190009170	lncRNA gene	Chr7:20825686-20830398 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010022543	lncRNA gene	Chr7:20852184-20856915 (+)
SPRET/EiJ	ENSMSPG00010051887	lncRNA gene	Chr7:20224230-20228917 (+)
WSB/EiJ	ENSIUOG00005053781	lncRNA gene	Chr7:15103096-15107839 (+)

Homology

• Gene Tree
  Gm4673
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000097750 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097750	Ensembl Gene Model | MGI Sequence Detail	4711	C57BL/6J
transcript	ENSMUST00000181395	Ensembl | MGI Sequence Detail	3660	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm4673:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65819	Chr7:30656352-30656388 (+)	36 bp
Tssr65820	Chr7:30656559-30656562 (+)	227 bp
Tssr65821	Chr7:30656723-30656725 (+)	390 bp