Gm4577 Gene Detail

Summary

• Symbol
  Gm4577
• Name
  predicted gene 4577

• Feature Type
  lncRNA gene
• IDs
  MGI:3782760
  NCBI Gene: 105246271
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:36014969-36019263 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782760	lncRNA gene	Chr17:36014701-36019263 (+)
129S1/SvImJ	ENSMUSG00200052418	lncRNA gene	Chr17:31645079-31649511 (+)
A/J	ENSMUSG00195049022	lncRNA gene	Chr17:32707489-32711903 (+)
AKR/J	ENSMUSG00220052687	lncRNA gene	Chr17:31508571-31513002 (+)
BALB/cJ	ENSMUSG00180043590	lncRNA gene	Chr17:32077284-32081697 (+)
C3H/HeJ	ENSMUSG00175042452	lncRNA gene	Chr17:31394399-31398827 (+)
C57BL/6NJ	ENSMUSG00215053996	lncRNA gene	Chr17:31465307-31469661 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003023	antisense lncRNA gene	Chr17:32479226-32483794 (+)
CAST/EiJ	ENSTCUG00005051819	lncRNA gene	Chr17:32531249-32535666 (+)
CBA/J	ENSMUSG00210052391	lncRNA gene	Chr17:31216461-31220889 (+)
DBA/2J	ENSMUSG00185054608	lncRNA gene	Chr17:34096454-34100868 (+)
FVB/NJ	ENSMUSG00205053761	lncRNA gene	Chr17:31758418-31762831 (+)
JF1/MsJ	ENSUMUG00000057871	lncRNA gene	Chr17:33038107-33042528 (+)
LP/J	ENSMUSG00230054913	lncRNA gene	Chr17:35133769-35138200 (+)
NOD/ShiLtJ	ENSMUSG00190053423	lncRNA gene	Chr17:31377571-31381982 (+)
NZO/HlLtJ	ENSMUSG00225055112	lncRNA gene	Chr17:37210482-37214913 (+)
PWK/PhJ	ENSLUMG00010044131	lncRNA gene	Chr17:31012175-31016580 (+)
SPRET/EiJ	ENSMSPG00010051229	lncRNA gene	Chr17:32221393-32225782 (+)
WSB/EiJ	ENSIUOG00005051831	lncRNA gene	Chr17:32200008-32204355 (+)

Homology

• Gene Tree
  Gm4577
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  10
• Gene trapped
  9
• Targeted
  1
• Genomic Mutations
  1 involving Gm4577
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000086867 (Evidence)
• NCBI Gene
  105246271

Representative Sequences			Length	Strain/Species
genomic	105246271	NCBI Gene Model | MGI Sequence Detail	4295	C57BL/6J
transcript	NR_168271	RefSeq | MGI Sequence Detail	662	C57BL/6

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for Gm4577:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144404	Chr17:36015796-36015802 (+)	830 bp