Gm4535 Pseudogene Detail

Summary

• Symbol
  Gm4535
• Name
  predicted gene 4535

• Feature Type
  pseudogene
• IDs
  MGI:3782719
  NCBI Gene: 100043585
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:140986550-140987107 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 86.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782719	pseudogene	Chr7:140986428-140987239 (+)
129S1/SvImJ	ENSMUSG00200047353	pseudogene	Chr7:127552129-127552686 (+)
A/J	ENSMUSG00195041097	pseudogene	Chr7:132034614-132035171 (+)
AKR/J	ENSMUSG00220036607	pseudogene	Chr7:125516290-125516847 (+)
BALB/cJ	ENSMUSG00180041237	pseudogene	Chr7:128726775-128727332 (+)
C3H/HeJ	ENSMUSG00175045811	pseudogene	Chr7:129455034-129455591 (+)
C57BL/6NJ	ENSMUSG00215047289	pseudogene	Chr7:128721617-128722174 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011690	pseudogene	Chr5:91749152-91749709 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210032878	pseudogene	Chr7:129213032-129213589 (+)
DBA/2J	ENSMUSG00185018151	pseudogene	Chr7:133491578-133492135 (+)
FVB/NJ	ENSMUSG00205046294	pseudogene	Chr7:129133853-129134410 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230043052	pseudogene	Chr7:139655045-139655602 (+)
NOD/ShiLtJ	ENSMUSG00190035035	pseudogene	Chr7:129320485-129321042 (+)
NZO/HlLtJ	ENSMUSG00225052278	pseudogene	Chr7:137864227-137864784 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005038095	pseudogene	Chr7:130053467-130054024 (+)

Homology

• Gene Tree
  Gm4535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm4535
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1
• CCDS
  CCDS52443.1

• Ensembl
  ENSMUSG00000091083 (Evidence)
• NCBI Gene
  100043585

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091083	Ensembl Gene Model | MGI Sequence Detail	558	C57BL/6J
transcript	ENSMUST00000182274	Ensembl | MGI Sequence Detail	558	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33