Trav9n-3 Gene Detail

Summary

• Symbol
  Trav9n-3
• Name
  T cell receptor alpha variable 9N-3
• Synonyms
  100043274, Gm10899

• Feature Type
  gene segment
• IDs
  MGI:3782511
  NCBI Gene: 100043274
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53469125-53469559 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.28 cM

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782511	gene segment	Chr14:53468890-53469559 (+)
129S1/SvImJ	ENSMUSG00200043954	gene segment	Chr14:42406377-42407046 (+)
A/J	ENSMUSG00195025130	gene segment	Chr14:42191520-42192188 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180052507	gene segment	Chr14:42253971-42254640 (+)
C3H/HeJ	ENSMUSG00175050014	gene segment	Chr14:43936427-43937096 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047847	gene segment	Chr14:42169707-42170375 (+)
DBA/2J	ENSMUSG00185055749	gene segment	Chr14:47371888-47372556 (+)
FVB/NJ	ENSMUSG00205045574	gene segment	Chr14:41515734-41516402 (+)
JF1/MsJ	ENSUMUG00000053793	gene segment	Chr14:58949601-58950270 (+)
LP/J	ENSMUSG00230053508	gene segment	Chr14:59772451-59773120 (+)
NOD/ShiLtJ	ENSMUSG00190049860	gene segment	Chr14:42317633-42317988 (+)
NZO/HlLtJ	ENSMUSG00225052412	gene segment	Chr14:50070519-50071188 (+)
PWK/PhJ	ENSLUMG00010048257	gene segment	Chr14:41822669-41823338 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  TRAV8-3, T cell receptor alpha variable 8-3

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV8-3, T cell receptor alpha variable 8-3
  
• Synonyms
  TCRAV1S4, TCRAV8S3, TRAV83
• Links
  HGNC:12148

  NCBI Gene ID: 28683

  UniProt: A0A0A6YYJ7

  
  
• Chr Location
  14q11.2; chr14:21852558-21853006 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav9n-3 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAV8-3
• Gene Tree
  Trav9n-3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096541 (Evidence)
• NCBI Gene
  100043274

Representative Sequences			Length	Strain/Species
genomic	100043274	NCBI Gene Model | MGI Sequence Detail	435	C57BL/6J
polypeptide	A0A075B695	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

References

• Summaries
  All 7
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61