Alyreffm6 Gene Detail

Summary

• Symbol
  Alyreffm6
• Name
  Aly/REF export factor family member 6
• Synonyms
  Gm4303

• Feature Type
  protein coding gene
• IDs
  MGI:3782483
  NCBI Gene: 100043231
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:100181834-100182743 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 51.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782483	protein coding gene	Chr10:100181834-100182743 (+)
129S1/SvImJ	ENSMUSG00200019583	protein coding gene	Chr10:96687188-96688097 (-)
A/J	ENSMUSG00195015258	protein coding gene	Chr10:97123497-97124421 (-)
A/J	ENSMUSG00195015251	protein coding gene	Chr10:97118376-97119285 (-)
AKR/J	ENSMUSG00220024342	protein coding gene	Chr10:96604926-96605831 (-)
BALB/cJ	ENSMUSG00180009267	protein coding gene	Chr10:97131113-97132037 (-)
BALB/cJ	ENSMUSG00180009260	protein coding gene	Chr10:97125992-97126901 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215006231	protein coding gene	Chr10:96721455-96722379 (-)
C57BL/6NJ	ENSMUSG00215006224	protein coding gene	Chr10:96716334-96717243 (-)
C57BL/6NJ	ENSMUSG00215006241	protein coding gene	Chr10:96726590-96727517 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210022632	protein coding gene	Chr10:96875209-96876120 (-)
DBA/2J	ENSMUSG00185018485	protein coding gene	Chr10:97073193-97074117 (-)
DBA/2J	ENSMUSG00185018480	protein coding gene	Chr10:97068072-97068981 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225040778	protein coding gene	Chr10:103217603-103218512 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  ALYREF, Aly/REF export factor

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ALYREF, Aly/REF export factor
  
• Synonyms
  ALY, ALY/REF, BEF, REF, THOC4
• Links
  HGNC:19071

  NCBI Gene ID: 10189

  UniProt: Q86V81

  
  
• Chr Location
  17q25.3; chr17:81887835-81891587 (-)  GRCh38

---

• MGI Vertebrate Homology
  Alyreffm6 stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: ALYREF
• Gene Tree
  Alyreffm6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Alyreffm6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2
• CCDS
  CCDS48681.1

• Ensembl
  ENSMUSG00000112931 (Evidence)
• NCBI Gene
  100043231

Representative Sequences			Length	Strain/Species
genomic	100043231	NCBI Gene Model | MGI Sequence Detail	910	C57BL/6J
transcript	NM_001166638	RefSeq | MGI Sequence Detail	910	C57BL/6
polypeptide	NP_001160110	RefSeq | MGI Sequence Detail	289	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:7595548

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87