Gm4271 Pseudogene Detail

Summary

• Symbol
  Gm4271
• Name
  predicted gene 4271

• Feature Type
  pseudogene
• IDs
  MGI:3782448
  NCBI Gene: 100043158
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:37043534-37045643 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 19.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782448	pseudogene	Chr17:37043534-37045643 (+)
129S1/SvImJ	ENSMUSG00200052017	pseudogene	Chr17:32506525-32508635 (+)
A/J	ENSMUSG00195049102	pseudogene	Chr17:33715499-33717609 (+)
AKR/J	ENSMUSG00220052225	pseudogene	Chr17:32502759-32504869 (+)
BALB/cJ	ENSMUSG00180046597	pseudogene	Chr17:33182846-33184955 (+)
C3H/HeJ	ENSMUSG00175045191	pseudogene	Chr17:32388720-32390830 (+)
C57BL/6NJ	ENSMUSG00215053217	pseudogene	Chr17:32341845-32343954 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037207	pseudogene	Chr17:33486482-33488422 (-)
CAST/EiJ	ENSTCUG00005052127	pseudogene	Chr17:33582499-33584609 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185055529	pseudogene	Chr17:35163814-35165923 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000057550	pseudogene	Chr17:34130656-34131840 (+)
LP/J	ENSMUSG00230054850	pseudogene	Chr17:36301406-36303516 (+)
NOD/ShiLtJ	ENSMUSG00190053851	pseudogene	Chr17:32390719-32392829 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010045660	pseudogene	Chr17:32011722-32012979 (+)
SPRET/EiJ	ENSMSPG00010051124	pseudogene	Chr17:33276938-33278010 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4271
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm4271
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000092521 (Evidence)
• NCBI Gene
  100043158

Representative Sequences			Length	Strain/Species
genomic	100043158	NCBI Gene Model | MGI Sequence Detail	2110	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53