Gm4270 Pseudogene Detail

Summary

• Symbol
  Gm4270
• Name
  predicted gene 4270

• Feature Type
  pseudogene
• IDs
  MGI:3782447
  NCBI Gene: 100043156
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:12828919-12829324 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 7.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782447	pseudogene	Chr7:12828917-12829374 (+)
129S1/SvImJ	ENSMUSG00200042624	pseudogene	Chr7:6870152-6870557 (+)
A/J	ENSMUSG00195052766	pseudogene	Chr7:6554789-6555194 (+)
AKR/J	ENSMUSG00220028406	pseudogene	Chr7:6037257-6037662 (+)
BALB/cJ	ENSMUSG00180051795	pseudogene	Chr7:6477809-6478214 (+)
C3H/HeJ	ENSMUSG00175051100	pseudogene	Chr7:6923509-6923914 (+)
C57BL/6NJ	ENSMUSG00215044828	pseudogene	Chr7:7151179-7151584 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029324	pseudogene	Chr7:6633210-6633615 (+)
CBA/J	ENSMUSG00210048136	pseudogene	Chr7:6193250-6193655 (+)
DBA/2J	ENSMUSG00185044873	pseudogene	Chr7:9725906-9726311 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000053954	pseudogene	Chr7:9374795-9375200 (+)
LP/J	ENSMUSG00230046985	pseudogene	Chr7:13908417-13908822 (+)
NOD/ShiLtJ	ENSMUSG00190053352	pseudogene	Chr7:10816454-10816859 (+)
NZO/HlLtJ	ENSMUSG00225054450	pseudogene	Chr7:11389463-11389868 (+)
PWK/PhJ	ENSLUMG00010051169	pseudogene	Chr7:10540921-10541326 (+)
SPRET/EiJ	ENSMSPG00010048910	pseudogene	Chr7:6703292-6703697 (+)
WSB/EiJ	ENSIUOG00005053587	pseudogene	Chr7:18352866-18353271 (-)

Homology

• Gene Tree
  Gm4270
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000109707 (Evidence)
• NCBI Gene
  100043156

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109707	Ensembl Gene Model | MGI Sequence Detail	406	C57BL/6J
transcript	ENSMUST00000209666	Ensembl | MGI Sequence Detail	406	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;