Gm4251 Gene Detail

Summary

• Symbol
  Gm4251
• Name
  predicted gene 4251

• Feature Type
  lncRNA gene
• IDs
  MGI:3782428
  NCBI Gene: 100043132
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:71488713-71508499 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  649 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782428	lncRNA gene	Chr14:71488679-71508503 (+)
129S1/SvImJ	ENSMUSG00200031451	lncRNA gene	Chr14:59887025-59906832 (+)
A/J	ENSMUSG00195015298	lncRNA gene	Chr14:60067028-60086865 (+)
AKR/J	ENSMUSG00220032865	lncRNA gene	Chr14:59397553-59417352 (+)
BALB/cJ	ENSMUSG00180036865	lncRNA gene	Chr14:59675488-59695321 (+)
C3H/HeJ	ENSMUSG00175040338	lncRNA gene	Chr14:61423321-61443119 (+)
C57BL/6NJ	ENSMUSG00215030984	lncRNA gene	Chr14:59607531-59627310 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040132	lncRNA gene	Chr14:61309627-61329434 (+)
CBA/J	ENSMUSG00210042816	lncRNA gene	Chr14:60046665-60066463 (+)
DBA/2J	ENSMUSG00185024668	lncRNA gene	Chr14:65208705-65228505 (+)
FVB/NJ	ENSMUSG00205039510	lncRNA gene	Chr14:59565239-59585033 (+)
JF1/MsJ	ENSUMUG00000045452	lncRNA gene	Chr14:76398227-76418057 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190040210	lncRNA gene	Chr14:59841706-59861506 (+)
NZO/HlLtJ	ENSMUSG00225040664	lncRNA gene	Chr14:67568527-67588321 (+)
PWK/PhJ	ENSLUMG00010039253	lncRNA gene	Chr14:59258345-59278147 (+)
SPRET/EiJ	ENSMSPG00010028891	lncRNA gene	Chr14:62824116-62845861 (+)
WSB/EiJ	ENSIUOG00005041896	lncRNA gene	Chr14:59278117-59297910 (+)

Homology

• Gene Tree
  Gm4251
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm4251
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  2

• Ensembl
  ENSMUSG00000115139 (Evidence)
• NCBI Gene
  100043132

Representative Sequences			Length	Strain/Species
genomic	100043132	NCBI Gene Model | MGI Sequence Detail	19787	C57BL/6J
transcript	NR_046075	RefSeq | MGI Sequence Detail	677	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm4251:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126501	Chr14:71488704-71488724 (+)	1 bp