Gm4230 Gene Detail

Summary

• Symbol
  Gm4230
• Name
  predicted gene 4230

• Feature Type
  lncRNA gene
• IDs
  MGI:3782406
  NCBI Gene: 100043099
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:56071225-56095549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  666 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782406	lncRNA gene	Chr18:56071225-56095549 (+)
129S1/SvImJ	ENSMUSG00200034002	lncRNA gene	Chr18:53124808-53156220 (+)
A/J	ENSMUSG00195005802	lncRNA gene	Chr18:53253282-53283787 (+)
AKR/J	ENSMUSG00220016553	lncRNA gene	Chr18:53238983-53269489 (+)
BALB/cJ	ENSMUSG00180012871	lncRNA gene	Chr18:53824265-53854773 (+)
C3H/HeJ	ENSMUSG00175037549	lncRNA gene	Chr18:53439246-53469739 (+)
C57BL/6NJ	ENSMUSG00215039544	lncRNA gene	Chr18:52799628-52823350 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027881	lncRNA gene	Chr18:52671874-52689702 (+)
CBA/J	ENSMUSG00210033933	lncRNA gene	Chr18:53384099-53414606 (+)
DBA/2J	ENSMUSG00185015593	lncRNA gene	Chr18:53291317-53321810 (+)
FVB/NJ	ENSMUSG00205019082	lncRNA gene	Chr18:52720779-52776951 (+)
JF1/MsJ	ENSUMUG00000034873	lncRNA gene	Chr18:53221925-53239628 (+)
LP/J	ENSMUSG00230012306	lncRNA gene	Chr18:55303899-55334403 (+)
NOD/ShiLtJ	ENSMUSG00190033684	lncRNA gene	Chr18:53001828-53042023 (+)
NZO/HlLtJ	ENSMUSG00225035741	lncRNA gene	Chr18:55183720-55214228 (+)
PWK/PhJ	ENSLUMG00010008437	lncRNA gene	Chr18:53356851-53374605 (+)
SPRET/EiJ	ENSMSPG00010018299	lncRNA gene	Chr18:53721821-53745341 (+)
WSB/EiJ	ENSIUOG00005010082	lncRNA gene	Chr18:52938163-52961859 (+)

Homology

• Gene Tree
  Gm4230
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm4230
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118141 (Evidence)
• NCBI Gene
  100043099

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118141	Ensembl Gene Model | MGI Sequence Detail	24325	C57BL/6J
transcript	ENSMUST00000235251	Ensembl | MGI Sequence Detail	1612	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm4230:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151123	Chr18:56072547-56072557 (+)	1,327 bp
Tssr151124	Chr18:56072639-56072659 (+)	1,424 bp