Gm4222 Pseudogene Detail

Summary

• Symbol
  Gm4222
• Name
  predicted gene 4222

• Feature Type
  pseudogene
• IDs
  MGI:3782398
  NCBI Gene: 100043090
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:89978763-89979232 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782398	pseudogene	Chr2:89978763-89979232 (+)
129S1/SvImJ	ENSMUSG00200054308	pseudogene	Chr2:87036079-87036548 (+)
A/J	ENSMUSG00195053976	pseudogene	Chr2:87090389-87090858 (+)
AKR/J	ENSMUSG00220029885	pseudogene	Chr17:15658473-15658942 (+)
AKR/J	ENSMUSG00220053187	pseudogene	Chr2:86974868-86975337 (+)
BALB/cJ	ENSMUSG00180054947	pseudogene	Chr2:86990814-86991283 (+)
C3H/HeJ	ENSMUSG00175054332	pseudogene	Chr2:87265349-87265818 (+)
C3H/HeJ	ENSMUSG00175045953	pseudogene	Chr17:15499832-15500301 (+)
C57BL/6NJ	ENSMUSG00215053918	pseudogene	Chr2:87097616-87098085 (+)
C57BL/6NJ	ENSMUSG00215044080	pseudogene	Chr17:15476787-15477256 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011539	pseudogene	Chr5:20438690-20439136 (-)
CAST/EiJ	ENSTCUG00005052972	pseudogene	Chr2:86504612-86505081 (+)
CBA/J	ENSMUSG00210044413	pseudogene	Chr2:87276527-87276996 (+)
CBA/J	ENSMUSG00210045383	pseudogene	Chr17:15307752-15308221 (+)
DBA/2J	ENSMUSG00185057252	pseudogene	Chr2:86987331-86987800 (+)
FVB/NJ	ENSMUSG00205052973	pseudogene	Chr2:86360366-86360835 (+)
FVB/NJ	ENSMUSG00205039879	pseudogene	Chr17:15964026-15964495 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230045959	pseudogene	Chr2:88738049-88738518 (+)
NOD/ShiLtJ	ENSMUSG00190044559	pseudogene	Chr17:15694595-15695064 (+)
NOD/ShiLtJ	ENSMUSG00190052490	pseudogene	Chr2:87066015-87066484 (+)
NZO/HlLtJ	ENSMUSG00225053812	pseudogene	Chr2:96654428-96654897 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4222
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm4222
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000091703 (Evidence)
• NCBI Gene
  100043090

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091703	Ensembl Gene Model | MGI Sequence Detail	470	C57BL/6J
transcript	ENSMUST00000165784	Ensembl | MGI Sequence Detail	470	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087