Gm4202 Pseudogene Detail

Summary

• Symbol
  Gm4202
• Name
  predicted gene 4202
• Synonyms
  Gm17510

• Feature Type
  pseudogene
• IDs
  MGI:3782379
  NCBI Gene: 100418460
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:92596732-92597458 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.14 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782379	pseudogene	Chr3:92596732-92597465 (+)
129S1/SvImJ	ENSMUSG00200039951	pseudogene	Chr3:89384354-89385086 (+)
129S1/SvImJ	ENSMUSG00200017057	pseudogene	Chr17:50944631-50945362 (-)
A/J	ENSMUSG00195053982	pseudogene	Chr3:89394053-89394785 (+)
A/J	ENSMUSG00195007394	pseudogene	Chr17:52343810-52344541 (-)
AKR/J	ENSMUSG00220013820	pseudogene	Chr17:51386870-51387601 (-)
AKR/J	ENSMUSG00220051210	pseudogene	Chr3:88614853-88615585 (+)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175007857	pseudogene	Chr17:51404331-51405062 (-)
C3H/HeJ	ENSMUSG00175049365	pseudogene	Chr3:89331866-89332598 (+)
C57BL/6NJ	ENSMUSG00215050378	pseudogene	Chr3:89943241-89943973 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010014	pseudogene	Chr15:31669080-31687708 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047415	pseudogene	Chr3:89446973-89447705 (+)
CBA/J	ENSMUSG00210029764	pseudogene	Chr17:51184564-51185295 (-)
DBA/2J	ENSMUSG00185009713	pseudogene	Chr17:54054447-54055178 (-)
DBA/2J	ENSMUSG00185054102	pseudogene	Chr3:89649347-89650079 (+)
FVB/NJ	ENSMUSG00205051443	pseudogene	Chr3:88440888-88441620 (+)
FVB/NJ	ENSMUSG00205007767	pseudogene	Chr17:51726337-51727068 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230029643	pseudogene	Chr17:55022076-55022807 (-)
LP/J	ENSMUSG00230046377	pseudogene	Chr3:91681821-91682553 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225012730	pseudogene	Chr3:94530013-94530745 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4202
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm4202
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000091421 (Evidence)
• NCBI Gene
  100418460

Representative Sequences			Length	Strain/Species
genomic	100418460	NCBI Gene Model | MGI Sequence Detail	727	C57BL/6J

Other
Accession IDs

MGI:4937144

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm4202:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30308	Chr3:92596598-92596613 (+)	-126 bp
Tssr30309	Chr3:92596614-92596644 (+)	-103 bp
Tssr30310	Chr3:92596677-92596713 (+)	-37 bp