Gm4130 Pseudogene Detail

Summary

• Symbol
  Gm4130
• Name
  predicted gene 4130

• Feature Type
  pseudogene
• IDs
  MGI:3782306
  NCBI Gene: 100042959
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:91409568-91410537 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 46.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782306	pseudogene	Chr13:91409051-91410539 (-)
129S1/SvImJ	ENSMUSG00200009456	pseudogene	Chr13:85902660-85903629 (-)
A/J	ENSMUSG00195024344	pseudogene	Chr13:86409835-86410804 (-)
AKR/J	ENSMUSG00220014030	pseudogene	Chr13:84910306-84911275 (-)
BALB/cJ	ENSMUSG00180016741	pseudogene	Chr13:86941570-86942539 (-)
C3H/HeJ	ENSMUSG00175024147	pseudogene	Chr13:87120674-87121643 (-)
C57BL/6NJ	ENSMUSG00215003074	pseudogene	Chr13:87006185-87007154 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009685	pseudogene	Chr13:86234767-86235736 (-)
CBA/J	ENSMUSG00210024545	pseudogene	Chr13:86400519-86401488 (-)
DBA/2J	ENSMUSG00185010171	pseudogene	Chr13:90086457-90087426 (-)
FVB/NJ	ENSMUSG00205009067	pseudogene	Chr13:85883551-85884520 (-)
JF1/MsJ	ENSUMUG00000022622	pseudogene	Chr13:89829815-89830784 (-)
LP/J	ENSMUSG00230004756	pseudogene	Chr13:100104635-100105604 (-)
NOD/ShiLtJ	ENSMUSG00190019514	pseudogene	Chr13:86790163-86791132 (-)
NZO/HlLtJ	ENSMUSG00225034417	pseudogene	Chr13:92634959-92635928 (-)
PWK/PhJ	ENSLUMG00010011697	pseudogene	Chr13:85934842-85935811 (-)
SPRET/EiJ	ENSMSPG00010038199	pseudogene	Chr6:137776632-137777601 (-)
SPRET/EiJ	ENSMSPG00010006964	pseudogene	Chr13:87131149-87132135 (-)
WSB/EiJ	ENSIUOG00005031954	pseudogene	Chr13:85820781-85821750 (-)

Homology

• Gene Tree
  Gm4130
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm4130
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000114579 (Evidence)
• NCBI Gene
  100042959

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114579	Ensembl Gene Model | MGI Sequence Detail	970	C57BL/6J
transcript	ENSMUST00000224136	Ensembl | MGI Sequence Detail	970	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm4130:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123404	Chr13:91410867-91410870 (-)	-332 bp