Gm4129 Gene Detail

Summary

• Symbol
  Gm4129
• Name
  predicted gene 4129

• Feature Type
  lncRNA gene
• IDs
  MGI:3782305
  NCBI Gene: 100042958
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:123030444-123035490 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 72.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782305	lncRNA gene	Chr10:123030444-123035490 (+)
129S1/SvImJ	ENSMUSG00200027941	lncRNA gene	Chr10:119376975-119379698 (+)
A/J	ENSMUSG00195022936	lncRNA gene	Chr10:119828517-119831219 (+)
AKR/J	ENSMUSG00220015017	lncRNA gene	Chr10:119446063-119448781 (+)
BALB/cJ	ENSMUSG00180019247	lncRNA gene	Chr10:119819669-119822371 (+)
C3H/HeJ	ENSMUSG00175025647	lncRNA gene	Chr10:119819392-119822116 (+)
C57BL/6NJ	ENSMUSG00215018542	lncRNA gene	Chr10:119446733-119449457 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035738	lncRNA gene	Chr10:118781591-118784321 (+)
CBA/J	ENSMUSG00210021584	lncRNA gene	Chr10:119655031-119657757 (+)
DBA/2J	ENSMUSG00185009495	lncRNA gene	Chr10:119764819-119767539 (+)
FVB/NJ	ENSMUSG00205026776	lncRNA gene	Chr10:119076665-119079388 (+)
JF1/MsJ	ENSUMUG00000027880	lncRNA gene	Chr10:121073391-121076071 (+)
LP/J	ENSMUSG00230034459	lncRNA gene	Chr10:121698399-121701136 (+)
NOD/ShiLtJ	ENSMUSG00190019287	lncRNA gene	Chr10:119872599-119875299 (+)
NZO/HlLtJ	ENSMUSG00225037916	lncRNA gene	Chr10:125936490-125939213 (+)
PWK/PhJ	ENSLUMG00010013713	lncRNA gene	Chr10:119493550-119496247 (+)
SPRET/EiJ	ENSMSPG00010017414	lncRNA gene	Chr10:121381694-121384353 (+)
WSB/EiJ	ENSIUOG00005014396	lncRNA gene	Chr10:119473413-119476119 (+)

Homology

• Gene Tree
  Gm4129
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  625
• Tissues
  28
• cDNA Data
  3
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000112294 (Evidence)
• NCBI Gene
  100042958

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112294	Ensembl Gene Model | MGI Sequence Detail	5047	C57BL/6J
transcript	ENSMUST00000220083	Ensembl | MGI Sequence Detail	823	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86