Gm4117 Gene Detail

Summary

• Symbol
  Gm4117
• Name
  predicted gene 4117

• Feature Type
  lncRNA gene
• IDs
  MGI:3782293
  NCBI Gene: 100042940
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:89881816-89938889 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 45.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1465 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782293	lncRNA gene	Chr13:89881816-90035289 (+)
129S1/SvImJ	ENSMUSG00200009782	lncRNA gene	Chr13:84372366-84521068 (+)
A/J	ENSMUSG00195024681	lncRNA gene	Chr13:84872037-85021157 (+)
AKR/J	ENSMUSG00220014300	lncRNA gene	Chr13:83381498-83535826 (+)
BALB/cJ	ENSMUSG00180016819	lncRNA gene	Chr13:85390663-85540202 (+)
C3H/HeJ	ENSMUSG00175024017	lncRNA gene	Chr13:85592468-85746405 (+)
C57BL/6NJ	ENSMUSG00215003054	lncRNA gene	Chr13:85477686-85625593 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013395	unclassified non-coding RNA gene	Chr13:83610822-83753176 (+)
CAST/EiJ	ENSTCUG00005009960	lncRNA gene	Chr13:84711529-84856243 (+)
CBA/J	ENSMUSG00210024831	lncRNA gene	Chr13:84867136-85021068 (+)
DBA/2J	ENSMUSG00185010296	lncRNA gene	Chr13:88559046-88712982 (+)
FVB/NJ	ENSMUSG00205008763	lncRNA gene	Chr13:84317675-84467103 (+)
JF1/MsJ	ENSUMUG00000022150	lncRNA gene	Chr13:88268463-88413013 (+)
LP/J	ENSMUSG00230004433	lncRNA gene	Chr13:98589193-98729111 (+)
NOD/ShiLtJ	ENSMUSG00190019207	lncRNA gene	Chr13:85236849-85390815 (+)
NZO/HlLtJ	ENSMUSG00225030610	lncRNA gene	Chr13:91106546-91260486 (+)
PWK/PhJ	ENSLUMG00010012185	lncRNA gene	Chr13:84368055-84512299 (+)
SPRET/EiJ	ENSMSPG00010006801	lncRNA gene	Chr13:85556926-85699759 (+)
WSB/EiJ	ENSIUOG00005031458	lncRNA gene	Chr13:84263607-84412389 (+)

Homology

• Gene Tree
  Gm4117
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm4117
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000089940 (Evidence)
• NCBI Gene
  100042940

Representative Sequences			Length	Strain/Species
genomic	100042940	NCBI Gene Model | MGI Sequence Detail	57074	C57BL/6J
transcript	AK040967	GenBank | ENA | DDBJ | MGI Sequence Detail	2691	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm4117:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120590	Chr13:89887570-89887590 (+)	5,764 bp
Tssr120591	Chr13:89887598-89887612 (+)	5,789 bp