Gm4052 Pseudogene Detail

Summary

• Symbol
  Gm4052
• Name
  predicted gene 4052

• Feature Type
  pseudogene
• IDs
  MGI:3782227
  NCBI Gene: 100042828
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:72498340-72498790 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 38.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782227	pseudogene	Chr13:72498340-72498793 (+)
129S1/SvImJ	ENSMUSG00200013642	pseudogene	Chr13:66846751-66847201 (+)
A/J	ENSMUSG00195031137	pseudogene	Chr13:67475831-67476281 (+)
AKR/J	ENSMUSG00220041197	pseudogene	Chr13:66068024-66068474 (+)
BALB/cJ	ENSMUSG00180026243	pseudogene	Chr13:67974218-67974668 (+)
C3H/HeJ	ENSMUSG00175008708	pseudogene	Chr13:68263520-68263970 (+)
C57BL/6NJ	ENSMUSG00215013379	pseudogene	Chr13:68040736-68041186 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012000	pseudogene	Chr13:67567328-67567778 (+)
CBA/J	ENSMUSG00210009657	pseudogene	Chr13:67586431-67586881 (+)
DBA/2J	ENSMUSG00185019314	pseudogene	Chr13:71267471-71267921 (+)
FVB/NJ	ENSMUSG00205031901	pseudogene	Chr13:66959088-66959538 (+)
JF1/MsJ	ENSUMUG00000037760	pseudogene	Chr13:71009551-71010001 (+)
LP/J	ENSMUSG00230026870	pseudogene	Chr13:81185209-81185659 (+)
NOD/ShiLtJ	ENSMUSG00190038868	pseudogene	Chr13:67580613-67581063 (+)
NZO/HlLtJ	ENSMUSG00225028474	pseudogene	Chr13:73676002-73676452 (+)
PWK/PhJ	ENSLUMG00010012188	pseudogene	Chr13:67058605-67059055 (+)
SPRET/EiJ	ENSMSPG00010033653	pseudogene	Chr13:67952031-67952481 (+)
WSB/EiJ	ENSIUOG00005023219	pseudogene	Chr13:66516836-66517286 (+)

Homology

• Gene Tree
  Gm4052
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm4052
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000113594 (Evidence)
• NCBI Gene
  100042828

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113594	Ensembl Gene Model | MGI Sequence Detail	451	C57BL/6J
transcript	ENSMUST00000220890	Ensembl | MGI Sequence Detail	451	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69