Gm4042 Pseudogene Detail

Summary

• Symbol
  Gm4042
• Name
  predicted gene 4042

• Feature Type
  pseudogene
• IDs
  MGI:3782217
  NCBI Gene: 100042806
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:50126388-50127014 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 27.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782217	pseudogene	Chr9:50126379-50127015 (+)
129S1/SvImJ	ENSMUSG00200018705	pseudogene	Chr9:47295460-47296096 (+)
A/J	ENSMUSG00195024367	pseudogene	Chr9:46983249-46983885 (+)
AKR/J	ENSMUSG00220040678	pseudogene	Chr9:47078860-47079496 (+)
BALB/cJ	ENSMUSG00180032111	pseudogene	Chr9:47094656-47095292 (+)
C3H/HeJ	ENSMUSG00175015737	pseudogene	Chr9:47106695-47107331 (+)
C57BL/6NJ	ENSMUSG00215038247	pseudogene	Chr9:47052436-47053072 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015816	pseudogene	Chr9:47028196-47028830 (+)
CBA/J	ENSMUSG00210016722	pseudogene	Chr9:47176892-47177528 (+)
DBA/2J	ENSMUSG00185012302	pseudogene	Chr9:47220897-47221533 (+)
FVB/NJ	ENSMUSG00205041297	pseudogene	Chr9:47457806-47458442 (+)
JF1/MsJ	ENSUMUG00000044531	pseudogene	Chr9:47279572-47280206 (+)
LP/J	ENSMUSG00230042214	pseudogene	Chr9:47511317-47511953 (+)
NOD/ShiLtJ	ENSMUSG00190028289	pseudogene	Chr9:47301249-47301885 (+)
NZO/HlLtJ	ENSMUSG00225044995	pseudogene	Chr9:47473435-47474071 (+)
PWK/PhJ	ENSLUMG00010022570	pseudogene	Chr9:47237789-47238425 (+)
SPRET/EiJ	ENSMSPG00010011920	pseudogene	Chr9:48055590-48056227 (+)
WSB/EiJ	ENSIUOG00005021319	pseudogene	Chr9:46723947-46724583 (+)

Homology

• Gene Tree
  Gm4042
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111589 (Evidence)
• NCBI Gene
  100042806

Representative Sequences			Length	Strain/Species
genomic	100042806	NCBI Gene Model | MGI Sequence Detail	627	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;