Gm4022 Gene Detail

Summary

• Symbol
  Gm4022
• Name
  predicted gene 4022

• Feature Type
  lncRNA gene
• IDs
  MGI:3782196
  NCBI Gene: 100042770
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:56411208-56445192 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  864 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782196	lncRNA gene	Chr14:56411208-56445192 (+)
129S1/SvImJ	ENSMUSG00200043587	lncRNA gene	Chr14:44998983-45029728 (+)
A/J	ENSMUSG00195035151	lncRNA gene	Chr14:45215741-45244912 (+)
AKR/J	ENSMUSG00220033133	lncRNA gene	Chr14:44543603-44571645 (+)
BALB/cJ	ENSMUSG00180052692	lncRNA gene	Chr14:44839430-44866938 (+)
C3H/HeJ	ENSMUSG00175052482	lncRNA gene	Chr14:46521740-46555736 (+)
C57BL/6NJ	ENSMUSG00215049113	lncRNA gene	Chr14:44734491-44763785 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049594	lncRNA gene	Chr14:46515240-46535410 (+)
CBA/J	ENSMUSG00210048993	lncRNA gene	Chr14:45202300-45235391 (+)
DBA/2J	ENSMUSG00185055727	lncRNA gene	Chr14:50323103-50343397 (+)
FVB/NJ	ENSMUSG00205047236	lncRNA gene	Chr14:44605125-44639044 (+)
JF1/MsJ	ENSUMUG00000048270	lncRNA gene	Chr14:61500984-61521233 (+)
LP/J	ENSMUSG00230053398	lncRNA gene	Chr14:62364828-62398812 (+)
NOD/ShiLtJ	ENSMUSG00190049411	lncRNA gene	Chr14:44968459-45001793 (+)
NZO/HlLtJ	ENSMUSG00225046955	lncRNA gene	Chr14:52655192-52689176 (+)
PWK/PhJ	ENSLUMG00010052044	lncRNA gene	Chr14:44424920-44458909 (+)
SPRET/EiJ	ENSMSPG00010048870	lncRNA gene	Chr14:47935206-47958537 (+)
WSB/EiJ	ENSIUOG00005043934	lncRNA gene	Chr14:44400187-44420406 (+)

Homology

• Gene Tree
  Gm4022
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm4022
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000114303 (Evidence)
• NCBI Gene
  100042770

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114303	Ensembl Gene Model | MGI Sequence Detail	33985	C57BL/6J
transcript	ENSMUST00000223614	Ensembl | MGI Sequence Detail	1613	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm4022:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125829	Chr14:56443830-56443857 (+)	32,636 bp