Gm3942 Gene Detail

Summary

• Symbol
  Gm3942
• Name
  predicted gene 3942

• Feature Type
  lncRNA gene
• IDs
  MGI:3782116
  NCBI Gene: 100042639
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:112673657-112681712 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  320 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782116	lncRNA gene	Chr10:112671639-112720344 (+)
129S1/SvImJ	ENSMUSG00200011044	lncRNA gene	Chr10:109091983-109099616 (+)
A/J	ENSMUSG00195008802	lncRNA gene	Chr10:109510899-109518532 (+)
AKR/J	ENSMUSG00220025720	lncRNA gene	Chr10:109088257-109095890 (+)
BALB/cJ	ENSMUSG00180025384	lncRNA gene	Chr10:109528092-109535725 (+)
C3H/HeJ	ENSMUSG00175015774	lncRNA gene	Chr10:109457307-109464940 (+)
C57BL/6NJ	ENSMUSG00215012843	lncRNA gene	Chr10:109174139-109181772 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011695	lncRNA gene	Chr10:108482341-108488606 (+)
CBA/J	ENSMUSG00210011842	lncRNA gene	Chr10:109327927-109335560 (+)
DBA/2J	ENSMUSG00185025279	lncRNA gene	Chr10:109442868-109450501 (+)
FVB/NJ	ENSMUSG00205010984	lncRNA gene	Chr10:108787794-108795427 (+)
JF1/MsJ	ENSUMUG00000011116	lncRNA gene	Chr10:110749545-110755783 (+)
LP/J	ENSMUSG00230026522	lncRNA gene	Chr10:111402475-111410108 (+)
NOD/ShiLtJ	ENSMUSG00190021382	lncRNA gene	Chr10:109558697-109566330 (+)
NZO/HlLtJ	ENSMUSG00225018338	lncRNA gene	Chr10:115656840-115664473 (+)
PWK/PhJ	ENSLUMG00010014514	lncRNA gene	Chr10:109124992-109131246 (+)
SPRET/EiJ	ENSMSPG00010006011	lncRNA gene	Chr10:110972881-110979880 (+)
WSB/EiJ	ENSIUOG00005010881	lncRNA gene	Chr10:109186025-109199821 (+)

Homology

• Gene Tree
  Gm3942
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000112722 (Evidence)
• NCBI Gene
  100042639

Representative Sequences			Length	Strain/Species
genomic	100042639	NCBI Gene Model | MGI Sequence Detail	8056	C57BL/6J
transcript	NR_152199	RefSeq | MGI Sequence Detail	1088	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm3942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3355	Chr10:112673609-112673619 (+)	-43 bp
Tssr95799	Chr10:112673622-112673637 (+)	-27 bp
Tssr3356	Chr10:112673653-112673660 (+)	0 bp