Gm3940 Pseudogene Detail

Summary

• Symbol
  Gm3940
• Name
  predicted gene 3940

• Feature Type
  pseudogene
• IDs
  MGI:3782114
  NCBI Gene: 100042634
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:52129794-52130225 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 26.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782114	pseudogene	Chr1:52129743-52130231 (-)
129S1/SvImJ	ENSMUSG00200002168	pseudogene	Chr1:49603834-49604265 (-)
A/J	ENSMUSG00195001925	pseudogene	Chr1:49501108-49501539 (-)
AKR/J	ENSMUSG00220003587	pseudogene	Chr1:49263108-49263539 (-)
BALB/cJ	ENSMUSG00180003173	pseudogene	Chr1:49438706-49439137 (-)
C3H/HeJ	ENSMUSG00175000164	pseudogene	Chr1:49530606-49531037 (-)
C57BL/6NJ	ENSMUSG00215003119	pseudogene	Chr1:49457801-49458232 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001066	pseudogene	Chr1:49362762-49363193 (-)
CBA/J	ENSMUSG00210029504	pseudogene	Chr1:49235717-49236148 (-)
DBA/2J	ENSMUSG00185030979	pseudogene	Chr1:50355342-50355773 (-)
FVB/NJ	ENSMUSG00205003860	pseudogene	Chr1:49181005-49181436 (-)
JF1/MsJ	ENSUMUG00000002891	pseudogene	Chr1:49333381-49333812 (-)
LP/J	ENSMUSG00230001114	pseudogene	Chr1:50351924-50352355 (-)
NOD/ShiLtJ	ENSMUSG00190002677	pseudogene	Chr1:49367033-49367464 (-)
NZO/HlLtJ	ENSMUSG00225009817	pseudogene	Chr1:53529770-53530201 (-)
PWK/PhJ	ENSLUMG00010002651	pseudogene	Chr1:48869006-48869437 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005003728	pseudogene	Chr1:49069554-49069985 (-)

Homology

• Gene Tree
  Gm3940
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm3940
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000078291 (Evidence)
• NCBI Gene
  100042634

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078291	Ensembl Gene Model | MGI Sequence Detail	432	C57BL/6J
transcript	ENSMUST00000105087	Ensembl | MGI Sequence Detail	432	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm3940:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11589	Chr1:52130225-52130237 (-)	-6 bp