Gm3888 Pseudogene Detail

Summary

• Symbol
  Gm3888
• Name
  predicted gene 3888

• Feature Type
  pseudogene
• IDs
  MGI:3782061
  NCBI Gene: 100042529
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:91924240-91925479 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 46.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782061	pseudogene	Chr15:91923884-91925487 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195021217	pseudogene	Chr15:88970880-88972119 (-)
AKR/J	ENSMUSG00220032707	pseudogene	Chr15:89009255-89010494 (-)
BALB/cJ	ENSMUSG00180015885	pseudogene	Chr15:88851618-88852857 (-)
C3H/HeJ	ENSMUSG00175030069	pseudogene	Chr15:89157133-89158372 (-)
C57BL/6NJ	ENSMUSG00215031892	pseudogene	Chr15:88959704-88960943 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210013366	pseudogene	Chr15:88938528-88939767 (-)
DBA/2J	ENSMUSG00185022686	pseudogene	Chr15:88989032-88990271 (-)
FVB/NJ	ENSMUSG00205039004	pseudogene	Chr15:88693954-88695193 (-)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190030903	pseudogene	Chr15:88980922-88982161 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035181	pseudogene	Chr15:88638872-88640111 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005011543	pseudogene	Chr15:89049755-89050994 (-)

Homology

• Gene Tree
  Gm3888
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm3888
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000116093 (Evidence)
• NCBI Gene
  100042529

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116093	Ensembl Gene Model | MGI Sequence Detail	1240	C57BL/6J
transcript	ENSMUST00000230077	Ensembl | MGI Sequence Detail	1240	Not Applicable

References

• Summaries
  All 22

  Phenotypes 18
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)