Gm3828 Pseudogene Detail

Summary

• Symbol
  Gm3828
• Name
  predicted gene 3828

• Feature Type
  pseudogene
• IDs
  MGI:3782000
  NCBI Gene: 118567793
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:80790288-80790544 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782000	pseudogene	Chr10:80789762-80796243 (-)
129S1/SvImJ	ENSMUSG00200051054	pseudogene	Chr10:77416957-77417213 (-)
A/J	ENSMUSG00195051082	pseudogene	Chr10:77812209-77812465 (-)
AKR/J	ENSMUSG00220049566	pseudogene	Chr10:77409873-77410129 (-)
BALB/cJ	ENSMUSG00180052998	pseudogene	Chr10:77822654-77822910 (-)
C3H/HeJ	ENSMUSG00175052872	pseudogene	Chr10:77693404-77693660 (-)
C57BL/6NJ	ENSMUSG00215053002	pseudogene	Chr10:77435273-77435529 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009439	pseudogene	Chr10:74957715-74957971 (-)
CAST/EiJ	ENSTCUG00005052160	pseudogene	Chr10:77322098-77322354 (-)
CBA/J	ENSMUSG00210050485	pseudogene	Chr10:77549432-77549688 (-)
DBA/2J	ENSMUSG00185053450	pseudogene	Chr10:77891871-77892127 (-)
FVB/NJ	ENSMUSG00205051372	pseudogene	Chr10:77604663-77604919 (-)
JF1/MsJ	ENSUMUG00000055747	pseudogene	Chr10:79124452-79124708 (-)
LP/J	ENSMUSG00230051082	pseudogene	Chr10:79661477-79661733 (-)
NOD/ShiLtJ	ENSMUSG00190052582	pseudogene	Chr10:77805579-77805835 (-)
NZO/HlLtJ	ENSMUSG00225053286	pseudogene	Chr10:83948006-83948262 (-)
PWK/PhJ	ENSLUMG00010052796	pseudogene	Chr10:77485982-77486238 (-)
SPRET/EiJ	ENSMSPG00010048186	pseudogene	Chr10:79100032-79100288 (-)
WSB/EiJ	ENSIUOG00005051618	pseudogene	Chr10:77550924-77551180 (-)

Homology

• Gene Tree
  Gm3828
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3828
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000083808 (Evidence)
• NCBI Gene
  118567793

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083808	Ensembl Gene Model | MGI Sequence Detail	257	C57BL/6J
transcript	ENSMUST00000121817	Ensembl | MGI Sequence Detail	257	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm3828:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98536	Chr10:80790552-80790573 (-)	-19 bp