Gm3822 Gene Detail

Summary

• Symbol
  Gm3822
• Name
  predicted gene 3822
• Synonyms
  Gm575, LOC231256

• Feature Type
  protein coding gene
• IDs
  MGI:3781994
  NCBI Gene: 100042394
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:66372090-66375024 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  237 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781994	protein coding gene	Chr5:66372090-66375024 (+)
129S1/SvImJ	ENSMUSG00200035871	unclassified gene	Chr5:61990584-61993533 (+)
A/J	ENSMUSG00195035743	unclassified gene	Chr5:61365688-61368637 (+)
AKR/J	ENSMUSG00220004590	unclassified gene	Chr5:61502391-61505340 (+)
BALB/cJ	ENSMUSG00180006429	unclassified gene	Chr5:61152174-61155123 (+)
C3H/HeJ	ENSMUSG00175029155	unclassified gene	Chr5:63186152-63189101 (+)
C57BL/6NJ	ENSMUSG00215006728	unclassified gene	Chr5:61919260-61922194 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001367	unclassified gene	Chr5:59527358-59530656 (+)
CAST/EiJ	ENSTCUG00005033505	unclassified gene	Chr5:61074841-61077825 (+)
CBA/J	ENSMUSG00210023478	unclassified gene	Chr5:62099066-62102015 (+)
DBA/2J	ENSMUSG00185005657	unclassified gene	Chr5:63956574-63959523 (+)
FVB/NJ	ENSMUSG00205011449	unclassified gene	Chr5:60902111-60905060 (+)
JF1/MsJ	ENSUMUG00000021015	unclassified gene	Chr5:68438846-68441791 (+)
LP/J	ENSMUSG00230009779	unclassified gene	Chr5:68603266-68606215 (+)
NOD/ShiLtJ	ENSMUSG00190004187	unclassified gene	Chr5:61090583-61093532 (+)
NZO/HlLtJ	ENSMUSG00225011067	unclassified gene	Chr5:73728619-73731568 (+)
PWK/PhJ	ENSLUMG00010014676	unclassified gene	Chr5:61042896-61045844 (+)
SPRET/EiJ	ENSMSPG00010035305	unclassified gene	Chr5:62853056-62856391 (+)
WSB/EiJ	ENSIUOG00005018199	unclassified gene	Chr5:64051488-64054437 (+)

Homology

• Gene Tree
  Gm3822
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm3822
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107125 (Evidence)
• NCBI Gene
  100042394

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107125	Ensembl Gene Model | MGI Sequence Detail	2935	C57BL/6J
transcript	AK133319	GenBank | ENA | DDBJ | MGI Sequence Detail	2936	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:2685421

References

• Summaries
  All 26

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm3822:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46528	Chr5:66373102-66373150 (+)	1,036 bp