Gm3815 Pseudogene Detail

Summary

• Symbol
  Gm3815
• Name
  predicted gene 3815

• Feature Type
  pseudogene
• IDs
  MGI:3781987
  NCBI Gene: 100042385
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:51136176-51136677 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 27.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781987	pseudogene	Chr18:51136132-51136859 (+)
129S1/SvImJ	ENSMUSG00200031142	pseudogene	Chr18:48186026-48186527 (+)
A/J	ENSMUSG00195025703	pseudogene	Chr18:48311055-48311556 (+)
AKR/J	ENSMUSG00220021813	pseudogene	Chr18:48278079-48278580 (+)
BALB/cJ	ENSMUSG00180007851	pseudogene	Chr18:48871471-48871972 (+)
C3H/HeJ	ENSMUSG00175011360	pseudogene	Chr18:48472039-48472540 (+)
C57BL/6NJ	ENSMUSG00215009909	pseudogene	Chr18:47857159-47857660 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210022633	pseudogene	Chr18:48413949-48414450 (+)
DBA/2J	ENSMUSG00185028537	pseudogene	Chr18:48333839-48334340 (+)
FVB/NJ	ENSMUSG00205016001	pseudogene	Chr18:47787855-47788356 (+)
JF1/MsJ	ENSUMUG00000047938	pseudogene	Chr8:98636111-98636351 (+)
LP/J	ENSMUSG00230029580	pseudogene	Chr18:50346028-50346529 (+)
NOD/ShiLtJ	ENSMUSG00190028727	pseudogene	Chr18:48027644-48028145 (+)
NZO/HlLtJ	ENSMUSG00225027758	pseudogene	Chr18:50243607-50244108 (+)
PWK/PhJ	ENSLUMG00010044690	pseudogene	Chr8:90029700-90029944 (+)
SPRET/EiJ	ENSMSPG00010006609	pseudogene	Chr8:92034253-92034493 (+)
WSB/EiJ	ENSIUOG00005009718	pseudogene	Chr18:47933047-47933549 (+)

Homology

• Gene Tree
  Gm3815
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm3815
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118088 (Evidence)
• NCBI Gene
  100042385

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118088	Ensembl Gene Model | MGI Sequence Detail	502	C57BL/6J
transcript	ENSMUST00000236182	Ensembl | MGI Sequence Detail	502	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67