Gm3810 Pseudogene Detail

Summary

• Symbol
  Gm3810
• Name
  predicted gene 3810
• Synonyms
  Gm12076

• Feature Type
  pseudogene
• IDs
  MGI:3781983
  NCBI Gene: 100042377
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:27457625-27458100 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 16.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781983	pseudogene	Chr11:27456559-27458218 (-)
129S1/SvImJ	ENSMUSG00200010822	pseudogene	Chr11:24489444-24489919 (-)
A/J	ENSMUSG00195014341	pseudogene	Chr11:24315013-24315488 (-)
AKR/J	ENSMUSG00220008813	pseudogene	Chr11:24454444-24454919 (-)
BALB/cJ	ENSMUSG00180008246	pseudogene	Chr11:24314719-24315194 (-)
C3H/HeJ	ENSMUSG00175016897	pseudogene	Chr11:24318529-24319004 (-)
C57BL/6NJ	ENSMUSG00215010965	pseudogene	Chr11:24399197-24399672 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009532	pseudogene	Chr11:23178708-23179189 (-)
CAST/EiJ	ENSTCUG00005029860	pseudogene	Chr11:24232818-24233293 (-)
CBA/J	ENSMUSG00210010138	pseudogene	Chr11:24313407-24313882 (-)
DBA/2J	ENSMUSG00185019512	pseudogene	Chr11:24401320-24401795 (-)
FVB/NJ	ENSMUSG00205023075	pseudogene	Chr11:24383459-24383934 (-)
JF1/MsJ	ENSUMUG00000011958	pseudogene	Chr11:24641415-24641890 (-)
LP/J	ENSMUSG00230015555	pseudogene	Chr11:25458786-25459261 (-)
NOD/ShiLtJ	ENSMUSG00190026109	pseudogene	Chr11:24508143-24508618 (-)
NZO/HlLtJ	ENSMUSG00225022248	pseudogene	Chr11:27486712-27487187 (-)
PWK/PhJ	ENSLUMG00010017640	pseudogene	Chr11:24315345-24315820 (-)
SPRET/EiJ	ENSMSPG00010020547	pseudogene	Chr11:24593164-24593643 (-)
WSB/EiJ	ENSIUOG00005013644	pseudogene	Chr11:24369277-24369752 (-)

Homology

• Gene Tree
  Gm3810
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3810
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082243 (Evidence)
• NCBI Gene
  100042377

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082243	Ensembl Gene Model | MGI Sequence Detail	476	C57BL/6J
transcript	ENSMUST00000122413	Ensembl | MGI Sequence Detail	476	Not Applicable

Other
Accession IDs

MGI:3650753

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80507 Waterston RH, et al., Initial sequencing and comparative analysis of the mouse genome. Nature. 2002 Dec 5;420(6915):520-62

TSS for Gm3810:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107202	Chr11:27457955-27457970 (-)	137 bp