Gm3800 Pseudogene Detail

Summary

• Symbol
  Gm3800
• Name
  predicted gene 3800

• Feature Type
  pseudogene
• IDs
  MGI:3781973
  NCBI Gene: 100042347
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:65461572-65462125 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781973	pseudogene	Chr13:65461530-65462165 (+)
129S1/SvImJ	ENSMUSG00200013083	pseudogene	Chr13:61568808-61569361 (+)
A/J	ENSMUSG00195029656	pseudogene	Chr13:61732722-61733275 (+)
AKR/J	ENSMUSG00220037696	pseudogene	Chr13:60814040-60814593 (+)
BALB/cJ	ENSMUSG00180026663	pseudogene	Chr13:62032178-62032731 (+)
C3H/HeJ	ENSMUSG00175008928	pseudogene	Chr13:61860281-61860834 (+)
C57BL/6NJ	ENSMUSG00215013973	pseudogene	Chr13:61873361-61873914 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011979	pseudogene	Chr13:62218788-62219341 (+)
CBA/J	ENSMUSG00210009202	pseudogene	Chr13:62059735-62060288 (+)
DBA/2J	ENSMUSG00185009424	pseudogene	Chr13:62890206-62890759 (+)
FVB/NJ	ENSMUSG00205030951	pseudogene	Chr13:61042121-61042674 (+)
JF1/MsJ	ENSUMUG00000032689	pseudogene	Chr13:62532046-62532599 (+)
LP/J	ENSMUSG00230034473	pseudogene	Chr13:72228323-72228876 (+)
NOD/ShiLtJ	ENSMUSG00190037311	pseudogene	Chr13:61799436-61799989 (+)
NZO/HlLtJ	ENSMUSG00225047313	pseudogene	Chr13:65951368-65951921 (+)
NZO/HlLtJ	ENSMUSG00225048630	pseudogene	Chr13:66019883-66020436 (+)
PWK/PhJ	ENSLUMG00010011755	pseudogene	Chr13:61346302-61346855 (+)
SPRET/EiJ	ENSMSPG00010030550	pseudogene	Chr13:61603174-61603727 (+)
WSB/EiJ	ENSIUOG00005021990	pseudogene	Chr13:60510786-60511339 (+)

Homology

• Gene Tree
  Gm3800
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3800
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000114194 (Evidence)
• NCBI Gene
  100042347

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114194	Ensembl Gene Model | MGI Sequence Detail	554	C57BL/6J
transcript	ENSMUST00000221086	Ensembl | MGI Sequence Detail	554	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69