Gm3749 Pseudogene Detail

Summary

• Symbol
  Gm3749
• Name
  predicted gene 3749

• Feature Type
  pseudogene
• IDs
  MGI:3781924
  NCBI Gene: 100042251
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:3119839-3120418 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 1.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781924	pseudogene	Chr16:3119839-3120419 (+)
129S1/SvImJ	ENSMUSG00200011891	pseudogene	Chr16:110499-111078 (+)
A/J	ENSMUSG00195052945	pseudogene	Chr19:112736-113315 (+)
A/J	ENSMUSG00195012120	pseudogene	Chr16:8316-8895 (+)
AKR/J	ENSMUSG00220017567	pseudogene	Chr16:78875-79454 (+)
BALB/cJ	ENSMUSG00180051208	pseudogene	Chr19:667590-668169 (+)
C3H/HeJ	ENSMUSG00175029761	pseudogene	Chr16:110249-110828 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033028	pseudogene	Chr16:111230-111809 (+)
CBA/J	ENSMUSG00210012212	pseudogene	Chr16:116895-117474 (+)
DBA/2J	ENSMUSG00185010459	pseudogene	Chr16:65296-65875 (+)
DBA/2J	ENSMUSG00185054135	pseudogene	Chr19:108600-109179 (+)
FVB/NJ	ENSMUSG00205052194	pseudogene	Chr19:103162-103741 (+)
JF1/MsJ	ENSUMUG00000037177	pseudogene	Chr16:110744-111323 (+)
LP/J	ENSMUSG00230012164	pseudogene	Chr16:2606352-2606931 (+)
LP/J	ENSMUSG00230054405	pseudogene	Chr19:1028430-1029009 (+)
NOD/ShiLtJ	ENSMUSG00190026910	pseudogene	Chr16:109863-110442 (+)
NZO/HlLtJ	ENSMUSG00225027238	pseudogene	Chr19:4737059-4737638 (+)
NZO/HlLtJ	ENSMUSG00225023199	pseudogene	Chr16:5848669-5849248 (+)
PWK/PhJ	ENSLUMG00010018141	pseudogene	Chr16:66508-67087 (+)
SPRET/EiJ	ENSMSPG00010030457	pseudogene	Chr13:61999179-61999759 (+)
WSB/EiJ	ENSIUOG00005017166	pseudogene	Chr16:106849-107428 (+)

Homology

• Gene Tree
  Gm3749
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000116388 (Evidence)
• NCBI Gene
  100042251

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116388	Ensembl Gene Model | MGI Sequence Detail	580	C57BL/6J
transcript	ENSMUST00000229309	Ensembl | MGI Sequence Detail	580	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;