Gm3744 Pseudogene Detail

Summary

• Symbol
  Gm3744
• Name
  predicted gene 3744

• Feature Type
  pseudogene
• IDs
  MGI:3781919
  NCBI Gene: 100042241
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:47074874-47075243 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 24.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781919	pseudogene	Chr18:47074832-47075366 (-)
129S1/SvImJ	ENSMUSG00200031311	pseudogene	Chr18:44092710-44093079 (-)
A/J	ENSMUSG00195025513	pseudogene	Chr18:44271216-44271585 (-)
AKR/J	ENSMUSG00220021851	pseudogene	Chr18:44221083-44221452 (-)
BALB/cJ	ENSMUSG00180008098	pseudogene	Chr18:44764416-44764785 (-)
C3H/HeJ	ENSMUSG00175011242	pseudogene	Chr18:44282344-44282713 (-)
C57BL/6NJ	ENSMUSG00215009058	pseudogene	Chr18:43960227-43960596 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014129	pseudogene	Chr18:43703078-43703447 (-)
CBA/J	ENSMUSG00210022500	pseudogene	Chr18:44334131-44334500 (-)
DBA/2J	ENSMUSG00185028613	pseudogene	Chr18:44234317-44234686 (-)
FVB/NJ	ENSMUSG00205015961	pseudogene	Chr18:43705115-43705484 (-)
JF1/MsJ	ENSUMUG00000029624	pseudogene	Chr18:44253050-44253419 (-)
LP/J	ENSMUSG00230029510	pseudogene	Chr18:46304145-46304514 (-)
NOD/ShiLtJ	ENSMUSG00190029363	pseudogene	Chr18:44005806-44006175 (-)
NZO/HlLtJ	ENSMUSG00225027714	pseudogene	Chr18:46185213-46185582 (-)
PWK/PhJ	ENSLUMG00010022131	pseudogene	Chr18:44364819-44365189 (-)
SPRET/EiJ	ENSMSPG00010013346	pseudogene	Chr18:44533743-44534112 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm3744
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm3744
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117411 (Evidence)
• NCBI Gene
  100042241

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117411	Ensembl Gene Model | MGI Sequence Detail	370	C57BL/6J
transcript	ENSMUST00000234725	Ensembl | MGI Sequence Detail	370	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67