Gm3734 Gene Detail

Summary

• Symbol
  Gm3734
• Name
  predicted gene 3734

• Feature Type
  lncRNA gene
• IDs
  MGI:3781909
  NCBI Gene: 100042226
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:46763740-46774670 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  410 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781909	lncRNA gene	Chr18:46761699-46792002 (+)
129S1/SvImJ	ENSMUSG00200030423	lncRNA gene	Chr18:43783301-43795719 (+)
A/J	ENSMUSG00195025462	lncRNA gene	Chr18:43961789-43974201 (+)
AKR/J	ENSMUSG00220021896	lncRNA gene	Chr18:43911669-43924089 (+)
BALB/cJ	ENSMUSG00180007876	lncRNA gene	Chr18:44451111-44463530 (+)
C3H/HeJ	ENSMUSG00175011011	lncRNA gene	Chr18:43969056-43981480 (+)
C57BL/6NJ	ENSMUSG00215008920	lncRNA gene	Chr18:43649122-43661284 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013765	lncRNA gene	Chr18:43393459-43405848 (+)
CBA/J	ENSMUSG00210022667	lncRNA gene	Chr18:44020855-44033268 (+)
DBA/2J	ENSMUSG00185028714	lncRNA gene	Chr18:43921031-43933450 (+)
FVB/NJ	ENSMUSG00205015160	lncRNA gene	Chr18:43391899-43404313 (+)
JF1/MsJ	ENSUMUG00000031084	lncRNA gene	Chr18:43944348-43956503 (+)
LP/J	ENSMUSG00230029409	lncRNA gene	Chr18:45994763-46007175 (+)
NOD/ShiLtJ	ENSMUSG00190028813	lncRNA gene	Chr18:43696421-43708833 (+)
NZO/HlLtJ	ENSMUSG00225027668	lncRNA gene	Chr18:45872165-45884324 (+)
PWK/PhJ	ENSLUMG00010021721	lncRNA gene	Chr18:44056186-44068630 (+)
SPRET/EiJ	ENSMSPG00010013153	lncRNA gene	Chr18:44213228-44225854 (+)
WSB/EiJ	ENSIUOG00005009379	lncRNA gene	Chr18:43623342-43635477 (+)

Homology

• Gene Tree
  Gm3734
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm3734
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  2

• Ensembl
  ENSMUSG00000117780 (Evidence)
• NCBI Gene
  100042226

Representative Sequences			Length	Strain/Species
genomic	100042226	NCBI Gene Model | MGI Sequence Detail	10931	C57BL/6J
transcript	XR_877382	RefSeq | MGI Sequence Detail	1191	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm3734:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150957	Chr18:46763975-46763981 (+)	238 bp