Gm3728 Gene Detail

Summary

• Symbol
  Gm3728
• Name
  predicted gene 3728

• Feature Type
  lncRNA gene
• IDs
  MGI:3781903
  NCBI Gene: 100042218
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:19983304-19987508 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781903	lncRNA gene	Chr19:19983297-20040877 (-)
129S1/SvImJ	ENSMUSG00200020757	lncRNA gene	Chr19:16664180-16730061 (-)
A/J	ENSMUSG00195018800	lncRNA gene	Chr19:16839559-16905769 (-)
AKR/J	ENSMUSG00220011059	lncRNA gene	Chr19:16815819-16870629 (-)
BALB/cJ	ENSMUSG00180019606	lncRNA gene	Chr19:17208996-17263846 (-)
C3H/HeJ	ENSMUSG00175003905	lncRNA gene	Chr19:16544575-16610455 (-)
C57BL/6NJ	ENSMUSG00215026408	lncRNA gene	Chr19:16590010-16645166 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008827	lncRNA gene	Chr19:16444012-16499318 (-)
CBA/J	ENSMUSG00210012914	lncRNA gene	Chr19:16782266-16848456 (-)
DBA/2J	ENSMUSG00185014188	lncRNA gene	Chr19:17175047-17240919 (-)
FVB/NJ	ENSMUSG00205004183	lncRNA gene	Chr19:16618776-16673582 (-)
JF1/MsJ	ENSUMUG00000039657	lncRNA gene	Chr19:17422622-17485530 (-)
LP/J	ENSMUSG00230022236	lncRNA gene	Chr19:18029590-18095454 (-)
NOD/ShiLtJ	ENSMUSG00190021252	lncRNA gene	Chr19:16576880-16631737 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010008858	lncRNA gene	Chr19:16751586-16814451 (-)
SPRET/EiJ	ENSMSPG00010019159	lncRNA gene	Chr19:16753529-16809856 (-)
WSB/EiJ	ENSIUOG00005007265	lncRNA gene	Chr19:16302694-16368931 (-)

Homology

• Gene Tree
  Gm3728
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000118150 (Evidence)
• NCBI Gene
  100042218

Representative Sequences			Length	Strain/Species
genomic	100042218	NCBI Gene Model | MGI Sequence Detail	4205	C57BL/6J
transcript	NR_166815	RefSeq | MGI Sequence Detail	659	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm3728:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158545	Chr19:19987503-19987512 (-)	0 bp