Gm3720 Pseudogene Detail

Summary

• Symbol
  Gm3720
• Name
  predicted gene 3720

• Feature Type
  pseudogene
• IDs
  MGI:3781896
  NCBI Gene: 100042204
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:46630152-46630942 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 24.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781896	pseudogene	Chr18:46630152-46630942 (+)
129S1/SvImJ	ENSMUSG00200030936	pseudogene	Chr18:43649596-43650388 (+)
A/J	ENSMUSG00195025250	pseudogene	Chr18:43828086-43828878 (+)
AKR/J	ENSMUSG00220021219	pseudogene	Chr18:43777959-43778751 (+)
BALB/cJ	ENSMUSG00180007765	pseudogene	Chr18:44317542-44318335 (+)
C3H/HeJ	ENSMUSG00175011024	pseudogene	Chr18:43835457-43836251 (+)
C57BL/6NJ	ENSMUSG00215008619	pseudogene	Chr18:43515262-43516053 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013716	pseudogene	Chr18:43265254-43266046 (+)
CBA/J	ENSMUSG00210022580	pseudogene	Chr18:43887282-43888074 (+)
DBA/2J	ENSMUSG00185028383	pseudogene	Chr18:43787425-43788217 (+)
FVB/NJ	ENSMUSG00205016101	pseudogene	Chr18:43258192-43258984 (+)
JF1/MsJ	ENSUMUG00000031524	pseudogene	Chr18:43812466-43813250 (+)
LP/J	ENSMUSG00230029355	pseudogene	Chr18:45861090-45861882 (+)
NOD/ShiLtJ	ENSMUSG00190028222	pseudogene	Chr18:43562723-43563515 (+)
NZO/HlLtJ	ENSMUSG00225027659	pseudogene	Chr18:45732053-45732844 (+)
PWK/PhJ	ENSLUMG00010022185	pseudogene	Chr18:43913843-43914634 (+)
SPRET/EiJ	ENSMSPG00010013753	pseudogene	Chr18:44083443-44084209 (+)
WSB/EiJ	ENSIUOG00005009483	pseudogene	Chr18:43491692-43492484 (+)

Homology

• Gene Tree
  Gm3720
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm3720
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118116 (Evidence)
• NCBI Gene
  100042204

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118116	Ensembl Gene Model | MGI Sequence Detail	791	C57BL/6J
transcript	ENSMUST00000235462	Ensembl | MGI Sequence Detail	791	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67