Rpl28-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl28-ps2
• Name
  ribosomal protein L28, pseudogene 2
• Synonyms
  Gm3661

• Feature Type
  pseudogene
• IDs
  MGI:3781837
  NCBI Gene: 100042091
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:83593986-83594461 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 37.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781837	pseudogene	Chr3:83593986-83594581 (+)
129S1/SvImJ	ENSMUSG00200019162	pseudogene	Chr3:80429003-80429840 (+)
A/J	ENSMUSG00195012141	pseudogene	Chr3:80466077-80466630 (+)
AKR/J	ENSMUSG00220001551	pseudogene	Chr3:80410834-80411387 (+)
BALB/cJ	ENSMUSG00180001966	pseudogene	Chr3:80583556-80584109 (+)
C3H/HeJ	ENSMUSG00175007900	pseudogene	Chr3:80393106-80393658 (+)
C57BL/6NJ	ENSMUSG00215049901	pseudogene	Chr3:80834701-80835255 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010932	pseudogene	Chr3:76456955-76457513 (+)
CAST/EiJ	ENSTCUG00005002057	pseudogene	Chr3:79935991-79936537 (+)
CBA/J	ENSMUSG00210026123	pseudogene	Chr3:80537328-80537882 (+)
DBA/2J	ENSMUSG00185012837	pseudogene	Chr3:80668227-80668780 (+)
FVB/NJ	ENSMUSG00205006571	pseudogene	Chr3:79461801-79462347 (+)
JF1/MsJ	ENSUMUG00000002374	pseudogene	Chr3:80224621-80225179 (+)
LP/J	ENSMUSG00230037530	pseudogene	Chr3:82649591-82650429 (+)
NOD/ShiLtJ	ENSMUSG00190002904	pseudogene	Chr3:80918286-80918831 (+)
NZO/HlLtJ	ENSMUSG00225007849	pseudogene	Chr3:85393690-85394243 (+)
PWK/PhJ	ENSLUMG00010006825	pseudogene	Chr3:80284141-80284700 (+)
SPRET/EiJ	ENSMSPG00010050314	pseudogene	Chr3:81097409-81097943 (+)
WSB/EiJ	ENSIUOG00005003191	pseudogene	Chr3:80894293-80894839 (+)

Homology

• Gene Tree
  Rpl28-ps2
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl28-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000102137 (Evidence)
• NCBI Gene
  100042091

Representative Sequences			Length	Strain/Species
genomic	100042091	NCBI Gene Model | MGI Sequence Detail	476	C57BL/6J

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rpl28-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29717	Chr3:83593982-83593988 (+)	-1 bp