Gm3587 Gene Detail

Summary

• Symbol
  Gm3587
• Name
  predicted gene 3587

• Feature Type
  lncRNA gene
• IDs
  MGI:3781764
  NCBI Gene: 100041951
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:35188807-35220996 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  993 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781764	lncRNA gene	Chr18:35172208-35221044 (-)
129S1/SvImJ	ENSMUSG00200045616	lncRNA gene	Chr18:32170507-32218928 (-)
A/J	ENSMUSG00195039128	lncRNA gene	Chr18:32331605-32379579 (-)
AKR/J	ENSMUSG00220017523	lncRNA gene	Chr18:32313709-32362229 (-)
BALB/cJ	ENSMUSG00180023552	lncRNA gene	Chr18:32781245-32829226 (-)
C3H/HeJ	ENSMUSG00175039556	lncRNA gene	Chr18:32283048-32338010 (-)
C57BL/6NJ	ENSMUSG00215034789	lncRNA gene	Chr18:32040845-32089360 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024836	lncRNA gene	Chr18:31943227-31993835 (-)
CBA/J	ENSMUSG00210021861	lncRNA gene	Chr18:32323445-32371425 (-)
DBA/2J	ENSMUSG00185021320	lncRNA gene	Chr18:32257970-32305960 (-)
FVB/NJ	ENSMUSG00205034790	lncRNA gene	Chr18:31975609-32024125 (-)
JF1/MsJ	ENSUMUG00000046295	lncRNA gene	Chr18:32409865-32470586 (-)
LP/J	ENSMUSG00230049490	lncRNA gene	Chr18:34367334-34415750 (-)
NOD/ShiLtJ	ENSMUSG00190021877	lncRNA gene	Chr18:32036853-32091813 (-)
NZO/HlLtJ	ENSMUSG00225047045	lncRNA gene	Chr18:34272348-34320854 (-)
PWK/PhJ	ENSLUMG00010013393	lncRNA gene	Chr18:32556686-32611996 (-)
SPRET/EiJ	ENSMSPG00010023866	lncRNA gene	Chr18:32606212-32656671 (-)
WSB/EiJ	ENSIUOG00005007910	lncRNA gene	Chr18:32036879-32086480 (-)

Homology

• Gene Tree
  Gm3587
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  28
• Gene trapped
  28
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  74
• RefSeq
  2

• Ensembl
  ENSMUSG00000117727 (Evidence)
• NCBI Gene
  100041951

Representative Sequences			Length	Strain/Species
genomic	100041951	NCBI Gene Model | MGI Sequence Detail	32190	C57BL/6J
transcript	XR_001782428	RefSeq | MGI Sequence Detail	1586	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm3587:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152858	Chr18:35220646-35220678 (-)	334 bp