Gm3549 Pseudogene Detail

Summary

• Symbol
  Gm3549
• Name
  predicted gene 3549

• Feature Type
  pseudogene
• IDs
  MGI:3781726
  NCBI Gene: 100041858
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:65146148-65146941 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781726	pseudogene	Chr6:65146139-65146941 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013495	pseudogene	Chr6:65096951-65097744 (+)
A/J	MGP_AJ_G0013480	pseudogene	Chr6:62251096-62251889 (+)
AKR/J	MGP_AKRJ_G0013447	pseudogene	Chr6:64229062-64229855 (+)
BALB/cJ	MGP_BALBcJ_G0013459	pseudogene	Chr6:62655922-62656715 (+)
C3H/HeJ	MGP_C3HHeJ_G0013478	pseudogene	Chr6:120000882-120001675 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013844	pseudogene	Chr6:66599067-66599860 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011917	pseudogene	Chr6:59592965-59593709 (+)
CAST/EiJ	MGP_CASTEiJ_G0013013	pseudogene	Chr6:64499757-64500494 (+)
CBA/J	MGP_CBAJ_G0013276	pseudogene	Chr6:69312028-69312821 (+)
DBA/2J	MGP_DBA2J_G0013360	pseudogene	Chr6:61950158-61950951 (+)
FVB/NJ	MGP_FVBNJ_G0013359	pseudogene	Chr6:61481394-61482187 (+)
LP/J	MGP_LPJ_G0013431	pseudogene	Chr6:65046064-65046857 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013378	pseudogene	Chr6:73076342-73077135 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013843	pseudogene	Chr6:64185579-64186372 (+)
PWK/PhJ	MGP_PWKPhJ_G0012820	pseudogene	Chr6:61114567-61115304 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012604	pseudogene	Chr6:63713439-63714188 (+)
WSB/EiJ	MGP_WSBEiJ_G0013060	pseudogene	Chr6:64477430-64478167 (+)

Homology

• Gene Tree
  Gm3549
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108230 (Evidence)
• NCBI Gene
  100041858

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108230	Ensembl Gene Model | MGI Sequence Detail	794	C57BL/6J
transcript	ENSMUST00000203873	Ensembl | MGI Sequence Detail	794	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;