Gm3534 Pseudogene Detail

Summary

• Symbol
  Gm3534
• Name
  predicted pseudogene 3534

• Feature Type
  pseudogene
• IDs
  MGI:3781711
  NCBI Gene: 100041831
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:48646075-48647075 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 24.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781711	pseudogene	Chr14:48646067-48647255 (+)
129S1/SvImJ	ENSMUSG00200017386	pseudogene	Chr14:37480973-37481982 (+)
A/J	ENSMUSG00195024950	pseudogene	Chr14:37686491-37687500 (+)
AKR/J	ENSMUSG00220039059	pseudogene	Chr14:37061381-37062390 (+)
BALB/cJ	ENSMUSG00180047767	pseudogene	Chr14:37295280-37296289 (+)
C3H/HeJ	ENSMUSG00175030615	pseudogene	Chr14:38975691-38976700 (+)
C57BL/6NJ	ENSMUSG00215038685	pseudogene	Chr14:37667458-37668458 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038511	pseudogene	Chr13:33316954-33317958 (+)
CAST/EiJ	ENSTCUG00005014671	pseudogene	Chr1:57266740-57267745 (+)
CAST/EiJ	ENSTCUG00005010589	pseudogene	Chr14:39469191-39470201 (+)
CAST/EiJ	ENSTCUG00005025958	pseudogene	Chr5:95976793-95977799 (+)
CAST/EiJ	ENSTCUG00005011992	pseudogene	Chr17:90482259-90483264 (+)
CBA/J	ENSMUSG00210044675	pseudogene	Chr14:37620877-37621886 (+)
DBA/2J	ENSMUSG00185056239	pseudogene	Chr14:42393702-42394711 (+)
FVB/NJ	ENSMUSG00205046810	pseudogene	Chr14:36823597-36824606 (+)
JF1/MsJ	ENSUMUG00000053442	pseudogene	Chr14:54443265-54444265 (+)
LP/J	ENSMUSG00230053324	pseudogene	Chr14:54651935-54652935 (+)
NOD/ShiLtJ	ENSMUSG00190046038	pseudogene	Chr14:37297540-37298549 (+)
NOD/ShiLtJ	ENSMUSG00190046860	pseudogene	Chr6:68585995-68587000 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010033036	pseudogene	Chr5:84602055-84603045 (-)
PWK/PhJ	ENSLUMG00010040474	pseudogene	Chr14:36893508-36894517 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005042012	pseudogene	Chr14:37190393-37191402 (+)

Homology

• Gene Tree
  Gm3534
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3534
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000098192 (Evidence)
• NCBI Gene
  100041831

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098192	Ensembl Gene Model | MGI Sequence Detail	1001	C57BL/6J
transcript	ENSMUST00000182522	Ensembl | MGI Sequence Detail	1001	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;