Gm3519 Gene Detail

Summary

• Symbol
  Gm3519
• Name
  predicted gene 3519
• Synonyms
  Gm43683

• Feature Type
  lncRNA gene
• IDs
  MGI:3781696
  NCBI Gene: 100041805
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:52598501-52600594 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781696	lncRNA gene	Chr5:52598143-52606135 (+)
129S1/SvImJ	ENSMUSG00200001433	lncRNA gene	Chr5:48151380-48153473 (+)
A/J	ENSMUSG00195015715	lncRNA gene	Chr5:47508904-47510997 (+)
AKR/J	ENSMUSG00220000948	lncRNA gene	Chr5:47578572-47580665 (+)
BALB/cJ	ENSMUSG00180007091	lncRNA gene	Chr5:47281630-47283723 (+)
C3H/HeJ	ENSMUSG00175016166	lncRNA gene	Chr5:49298764-49300857 (+)
C57BL/6NJ	ENSMUSG00215001867	lncRNA gene	Chr5:48073193-48075286 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003174	lncRNA gene	Chr5:47432554-47434105 (+)
CBA/J	ENSMUSG00210024425	lncRNA gene	Chr5:48259158-48261251 (+)
DBA/2J	ENSMUSG00185001510	lncRNA gene	Chr5:50137624-50139717 (+)
FVB/NJ	ENSMUSG00205002977	lncRNA gene	Chr5:47088463-47090556 (+)
JF1/MsJ	ENSUMUG00000000705	lncRNA gene	Chr5:54713110-54714662 (+)
LP/J	ENSMUSG00230010966	lncRNA gene	Chr5:54815053-54817146 (+)
NOD/ShiLtJ	ENSMUSG00190000819	lncRNA gene	Chr5:47204697-47206790 (+)
NZO/HlLtJ	ENSMUSG00225028750	lncRNA gene	Chr5:59917344-59919437 (+)
PWK/PhJ	ENSLUMG00010001493	lncRNA gene	Chr5:47382529-47384081 (+)
SPRET/EiJ	ENSMSPG00010013660	lncRNA gene	Chr5:48866663-48868217 (+)
WSB/EiJ	ENSIUOG00005019955	lncRNA gene	Chr5:50178847-50180940 (+)

Homology

• Gene Tree
  Gm3519
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm3519
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000106380 (Evidence)
• NCBI Gene
  100041805

Representative Sequences			Length	Strain/Species
genomic	100041805	NCBI Gene Model | MGI Sequence Detail	2094	C57BL/6J
transcript	NR_152197	RefSeq | MGI Sequence Detail	1676	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663820

References

• Summaries
  All 21

  Phenotypes 13
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707