Gm3513 Gene Detail

Summary

• Symbol
  Gm3513
• Name
  predicted gene 3513

• Feature Type
  lncRNA gene
• IDs
  MGI:3781690
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:79458621-79459500 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 34.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781690	lncRNA gene	Chr3:79458621-79459500 (-)
129S1/SvImJ	ENSMUSG00200019279	lncRNA gene	Chr3:76239013-76239851 (-)
A/J	ENSMUSG00195011924	lncRNA gene	Chr3:76302188-76303046 (-)
AKR/J	ENSMUSG00220001526	lncRNA gene	Chr3:76315351-76316209 (-)
BALB/cJ	ENSMUSG00180002075	lncRNA gene	Chr3:76394110-76394969 (-)
C3H/HeJ	ENSMUSG00175007525	lncRNA gene	Chr3:76240349-76241207 (-)
C57BL/6NJ	ENSMUSG00215002049	lncRNA gene	Chr3:76690994-76691874 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034495	sense intronic lncRNA gene	Chr3:72304123-72304962 (-)
CAST/EiJ	ENSTCUG00005002050	lncRNA gene	Chr3:75800943-75801802 (-)
CBA/J	ENSMUSG00210025916	lncRNA gene	Chr3:76322780-76323638 (-)
DBA/2J	ENSMUSG00185013036	lncRNA gene	Chr3:76478854-76479712 (-)
FVB/NJ	ENSMUSG00205006430	lncRNA gene	Chr3:75335510-75336368 (-)
JF1/MsJ	ENSUMUG00000001864	lncRNA gene	Chr3:76065654-76066497 (-)
LP/J	ENSMUSG00230010107	lncRNA gene	Chr3:78493671-78494509 (-)
NOD/ShiLtJ	ENSMUSG00190002743	lncRNA gene	Chr3:76813280-76814138 (-)
NZO/HlLtJ	ENSMUSG00225004588	lncRNA gene	Chr3:81209158-81210016 (-)
PWK/PhJ	ENSLUMG00010006501	lncRNA gene	Chr3:76134571-76135414 (-)
SPRET/EiJ	ENSMSPG00010017788	lncRNA gene	Chr3:76867478-76868344 (-)
WSB/EiJ	ENSIUOG00005003292	lncRNA gene	Chr3:76724349-76725187 (-)

Homology

• Gene Tree
  Gm3513
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3513
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000089746 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089746	Ensembl Gene Model | MGI Sequence Detail	880	C57BL/6J
transcript	ENSMUST00000161319	Ensembl | MGI Sequence Detail	637	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm3513:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33721	Chr3:79459465-79459514 (-)	10 bp