Mpc1-ps Pseudogene Detail

Summary

• Symbol
  Mpc1-ps
• Name
  mitochondrial pyruvate carrier 1, pseudogene
• Synonyms
  Brp44l-ps

• Feature Type
  pseudogene
• IDs
  MGI:3781628
  NCBI Gene: 100041649
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:110824999-110825328 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 60.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781628	pseudogene	Chr12:110824504-110825388 (-)
129S1/SvImJ	ENSMUSG00200027542	pseudogene	Chr12:102601360-102601689 (-)
A/J	ENSMUSG00195046903	pseudogene	Chr12:105124434-105124763 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180050962	pseudogene	Chr12:104364456-104364785 (-)
C3H/HeJ	ENSMUSG00175050490	pseudogene	Chr12:106933080-106933409 (-)
C57BL/6NJ	ENSMUSG00215050954	pseudogene	Chr12:103637312-103637641 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210031732	pseudogene	Chr12:103994542-103994871 (-)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205039043	pseudogene	Chr12:103049238-103049567 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230044816	pseudogene	Chr12:112865989-112866318 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225043175	pseudogene	Chr12:114614172-114614501 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010025972	pseudogene	Chr12:106331131-106331295 (-)
WSB/EiJ	ENSIUOG00005039764	pseudogene	Chr12:103032605-103032934 (-)
WSB/EiJ	ENSIUOG00005020340	pseudogene	Chr18:10714238-10714567 (+)

Homology

• Gene Tree
  Mpc1-ps
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000091498 (Evidence)
• NCBI Gene
  100041649

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091498	Ensembl Gene Model | MGI Sequence Detail	330	C57BL/6J
transcript	ENSMUST00000181662	Ensembl | MGI Sequence Detail	330	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Mpc1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117799	Chr12:110825345-110825379 (-)	-34 bp