Gm3360 Pseudogene Detail

Summary

• Symbol
  Gm3360
• Name
  predicted gene 3360

• Feature Type
  pseudogene
• IDs
  MGI:3781538
  NCBI Gene: 100041472
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:11187246-11188354 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 3.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781538	pseudogene	Chr5:11187246-11243557 (+)
129S1/SvImJ	ENSMUSG00200002907	pseudogene	Chr5:7810461-7811569 (-)
129S1/SvImJ	ENSMUSG00200002914	pseudogene	Chr5:7902759-7903866 (-)
A/J	ENSMUSG00195012598	pseudogene	Chr5:7787423-7788531 (+)
AKR/J	ENSMUSG00220002237	pseudogene	Chr5:7661924-7835689 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215029856	pseudogene	Chr5:7202841-7203946 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001901	pseudogene	Chr5:7725034-7800518 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185030047	pseudogene	Chr5:8191476-8247795 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000004170	pseudogene	Chr5:8862044-8863152 (-)
LP/J	ENSMUSG00230003890	pseudogene	Chr5:12751739-12752847 (+)
LP/J	ENSMUSG00230003768	pseudogene	Chr5:12197664-12253701 (+)
NOD/ShiLtJ	ENSMUSG00190013085	pseudogene	Chr5:7449020-7450127 (+)
NZO/HlLtJ	ENSMUSG00225009446	pseudogene	Chr5:15874239-15930496 (+)
NZO/HlLtJ	ENSMUSG00225009570	pseudogene	Chr5:16428537-16429645 (+)
PWK/PhJ	ENSLUMG00010019970	pseudogene	Chr5:7984683-7985790 (-)
SPRET/EiJ	ENSMSPG00010005256	pseudogene	Chr5:7952799-8006470 (+)
WSB/EiJ	ENSIUOG00005027346	pseudogene	Chr5:7687820-7688902 (-)

Homology

• Gene Tree
  Gm3360
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000105705 (Evidence)
• NCBI Gene
  100041472

Representative Sequences			Length	Strain/Species
genomic	100041472	NCBI Gene Model | MGI Sequence Detail	1109	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;