Gm3227 Gene Detail

Summary

• Symbol
  Gm3227
• Name
  predicted gene 3227

• Feature Type
  lncRNA gene
• IDs
  MGI:3781405
  NCBI Gene: 100041241
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:25730547-25736890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 14.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781405	lncRNA gene	Chr18:25715664-25736890 (+)
129S1/SvImJ	ENSMUSG00200016440	lncRNA gene	Chr18:22727768-22734111 (+)
A/J	ENSMUSG00195002493	lncRNA gene	Chr18:22896002-22902345 (+)
AKR/J	ENSMUSG00220011489	lncRNA gene	Chr18:22883728-22890072 (+)
BALB/cJ	ENSMUSG00180003615	lncRNA gene	Chr18:23336228-23342571 (+)
C3H/HeJ	ENSMUSG00175024626	lncRNA gene	Chr18:22862756-22869099 (+)
C57BL/6NJ	ENSMUSG00215025683	lncRNA gene	Chr18:22587961-22594303 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016419	lncRNA gene	Chr18:22567282-22573619 (+)
CBA/J	ENSMUSG00210016245	lncRNA gene	Chr18:22886923-22893266 (+)
DBA/2J	ENSMUSG00185023348	lncRNA gene	Chr18:22834962-22841305 (+)
FVB/NJ	ENSMUSG00205025233	lncRNA gene	Chr18:22553268-22559611 (+)
JF1/MsJ	ENSUMUG00000029223	lncRNA gene	Chr18:22928566-22934904 (+)
LP/J	ENSMUSG00230006402	lncRNA gene	Chr18:24923602-24929945 (+)
NOD/ShiLtJ	ENSMUSG00190007198	lncRNA gene	Chr18:22643231-22649574 (+)
NZO/HlLtJ	ENSMUSG00225025800	lncRNA gene	Chr18:24887027-24893370 (+)
PWK/PhJ	ENSLUMG00010003699	lncRNA gene	Chr18:23117274-23123602 (+)
SPRET/EiJ	ENSMSPG00010022613	lncRNA gene	Chr18:23012082-23018547 (+)
WSB/EiJ	ENSIUOG00005002900	lncRNA gene	Chr18:22666432-22672785 (+)

Homology

• Gene Tree
  Gm3227
  

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000114306 (Evidence)
• NCBI Gene
  100041241

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114306	Ensembl Gene Model | MGI Sequence Detail	6344	C57BL/6J
transcript	ENSMUST00000223994	Ensembl | MGI Sequence Detail	2167	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;