Rpl23a-ps3 Pseudogene Detail

Summary

• Symbol
  Rpl23a-ps3
• Name
  ribosomal protein L23A, pseudogene 3
• Synonyms
  Gm3174

• Feature Type
  pseudogene
• IDs
  MGI:3781353
  NCBI Gene: 100041163
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:33892612-33893079 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 20.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781353	pseudogene	Chr14:33892598-33893130 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195014810	pseudogene	Chr14:26793495-26793962 (+)
AKR/J	ENSMUSG00220037846	pseudogene	Chr14:25912199-25912666 (+)
BALB/cJ	ENSMUSG00180029172	pseudogene	Chr14:25881949-25882416 (+)
C3H/HeJ	ENSMUSG00175040737	pseudogene	Chr14:25949090-25949557 (+)
C57BL/6NJ	ENSMUSG00215033499	pseudogene	Chr14:26185799-26186266 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210044953	pseudogene	Chr14:26196276-26196743 (+)
DBA/2J	ENSMUSG00185043154	pseudogene	Chr14:30457129-30457596 (+)
FVB/NJ	ENSMUSG00205037266	pseudogene	Chr14:26053793-26054260 (+)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190019662	pseudogene	Chr14:26206168-26206635 (+)
NZO/HlLtJ	ENSMUSG00225042017	pseudogene	Chr14:32080650-32081117 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005012452	pseudogene	Chr14:26031310-26031777 (+)

Homology

• Gene Tree
  Rpl23a-ps3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000078126 (Evidence)
• NCBI Gene
  100041163

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078126	Ensembl Gene Model | MGI Sequence Detail	468	C57BL/6J
transcript	ENSMUST00000104925	Ensembl | MGI Sequence Detail	468	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl23a-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125067	Chr14:33892597-33892598 (+)	-14 bp