Gm3096 Pseudogene Detail

Summary

• Symbol
  Gm3096
• Name
  predicted gene 3096

• Feature Type
  pseudogene
• IDs
  MGI:3781272
  NCBI Gene: 100041013
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:100935595-100935958 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 53.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781272	pseudogene	Chr9:100935575-100936177 (+)
129S1/SvImJ	ENSMUSG00200017198	pseudogene	Chr9:98061819-98062169 (+)
A/J	ENSMUSG00195019167	pseudogene	Chr9:97308031-97308394 (+)
AKR/J	ENSMUSG00220039524	pseudogene	Chr9:97669688-97670038 (+)
BALB/cJ	ENSMUSG00180024241	pseudogene	Chr9:97624783-97625146 (+)
C3H/HeJ	ENSMUSG00175012701	pseudogene	Chr9:97967458-97967821 (+)
C57BL/6NJ	ENSMUSG00215023796	pseudogene	Chr9:97954189-97954552 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012466	pseudogene	Chr9:96542678-96543040 (+)
CAST/EiJ	ENSTCUG00005013875	pseudogene	Chr9:97755155-97755516 (+)
CBA/J	ENSMUSG00210015896	pseudogene	Chr9:97792529-97792879 (+)
DBA/2J	ENSMUSG00185012814	pseudogene	Chr9:97974704-97975067 (+)
FVB/NJ	ENSMUSG00205024955	pseudogene	Chr9:97979863-97980213 (+)
JF1/MsJ	ENSUMUG00000046415	pseudogene	Chr9:97792974-97793335 (+)
LP/J	ENSMUSG00230022231	pseudogene	Chr9:98133007-98133370 (+)
NOD/ShiLtJ	ENSMUSG00190041008	pseudogene	Chr9:97599900-97600263 (+)
NZO/HlLtJ	ENSMUSG00225020430	pseudogene	Chr9:98350013-98350376 (+)
PWK/PhJ	ENSLUMG00010028348	pseudogene	Chr9:97744630-97744991 (+)
SPRET/EiJ	ENSMSPG00010004020	pseudogene	Chr9:99600640-99601001 (+)
WSB/EiJ	ENSIUOG00005026613	pseudogene	Chr9:97060613-97060963 (+)

Homology

• Gene Tree
  Gm3096
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3096
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100563 (Evidence)
• NCBI Gene
  100041013

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100563	Ensembl Gene Model | MGI Sequence Detail	364	C57BL/6J
transcript	ENSMUST00000185770	Ensembl | MGI Sequence Detail	364	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm3096:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86715	Chr9:100935567-100935587 (+)	-18 bp