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Litchi Gene Detail
Summary
  • Symbol
    Litchi
  • Name
    long non-coding RNA in Chat intron
  • Synonyms
    Gm2990
Location &
Maps
more
  • Sequence Map
    Chr14:32147516-32205622 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 19.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1636 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3781168
 lncRNA gene Chr14:32147516-32205622 (+)
129S1/SvImJ ENSMUSG00200038236
 lncRNA gene Chr14:24010597-24029099 (+)
A/J ENSMUSG00195013884
 lncRNA gene Chr14:25084672-25103182 (+)
AKR/J ENSMUSG00220038150
 lncRNA gene Chr14:24197015-24215521 (+)
BALB/cJ ENSMUSG00180030072
 lncRNA gene Chr14:24173202-24191714 (+)
C3H/HeJ ENSMUSG00175044135
 lncRNA gene Chr14:24240410-24258919 (+)
C57BL/6NJ ENSMUSG00215037122
 lncRNA gene Chr14:24477038-24495549 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005026
 lincRNA gene Chr14:24800102-24818615 (+)
CAST/EiJ ENSTCUG00005024729
 lncRNA gene Chr14:24319477-24338156 (+)
CBA/J ENSMUSG00210045813
 lncRNA gene Chr14:24483320-24501829 (+)
DBA/2J ENSMUSG00185042423
 lncRNA gene Chr14:28752684-28771193 (+)
FVB/NJ ENSMUSG00205036395
 lncRNA gene Chr14:24344390-24362903 (+)
JF1/MsJ ENSUMUG00000051784
 lncRNA gene Chr14:36014870-36033565 (+)
LP/J ENSMUSG00230037863
 lncRNA gene Chr14:36034567-36053069 (+)
NOD/ShiLtJ ENSMUSG00190020288
 lncRNA gene Chr14:24496933-24515441 (+)
NZO/HlLtJ ENSMUSG00225037497
 lncRNA gene Chr14:30371626-30390135 (+)
PWK/PhJ ENSLUMG00010022557
 lncRNA gene Chr14:12604807-12623956 (+)
SPRET/EiJ ENSMSPG00010044000
 lncRNA gene Chr14:26169148-26189407 (+)
WSB/EiJ ENSIUOG00005012794
 lncRNA gene Chr14:24307850-24326346 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    1 phenotype reference
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit impaired motor neuron dendritic complexity and axonal growth, decreased grip strength, impaired coordination, and muscle weakness.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    5
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      34
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000097794 Ensembl Gene Model | MGI Sequence Detail 58107 C57BL/6J ±  kb
    transcript ENSMUST00000317538 Ensembl | MGI Sequence Detail 2093 Not Applicable  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 1
      cDNA 1

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:7714888
    References
    more
    • Summaries
      All 10
      Developmental Gene Expression 1
      Gene Ontology 1
      Phenotypes 1
    • Earliest
      J:345795 Hsu HC, et al., LncRNA Litchi is a regulator for harmonizing maturity and resilient functionality in spinal motor neurons. iScience. 2024 Mar 15;27(3):109207
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory