Gm2965 Pseudogene Detail

Summary

• Symbol
  Gm2965
• Name
  predicted gene 2965

• Feature Type
  pseudogene
• IDs
  MGI:3781143
  NCBI Gene: 100040785
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:38277600-38277942 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 18.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781143	pseudogene	Chr3:38277599-38277967 (+)
129S1/SvImJ	ENSMUSG00200007087	pseudogene	Chr3:35011760-35012098 (+)
A/J	ENSMUSG00195001490	pseudogene	Chr3:34970101-34970439 (+)
AKR/J	ENSMUSG00220000614	pseudogene	Chr3:35041336-35041678 (+)
BALB/cJ	ENSMUSG00180002827	pseudogene	Chr3:35132775-35133117 (+)
C3H/HeJ	ENSMUSG00175003544	pseudogene	Chr3:35002475-35002813 (+)
C57BL/6NJ	ENSMUSG00215001584	pseudogene	Chr3:35406863-35407205 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010816	pseudogene	Chr3:33037020-33037368 (+)
CAST/EiJ	ENSTCUG00005001149	pseudogene	Chr3:34856202-34856544 (+)
CBA/J	ENSMUSG00210002013	pseudogene	Chr3:35057531-35057869 (+)
DBA/2J	ENSMUSG00185001694	pseudogene	Chr3:35270457-35270795 (+)
FVB/NJ	ENSMUSG00205000775	pseudogene	Chr3:34452775-34453117 (+)
JF1/MsJ	ENSUMUG00000001072	pseudogene	Chr3:34826986-34827328 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001527	pseudogene	Chr3:35308394-35308736 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010000868	pseudogene	Chr3:34857271-34857613 (+)
SPRET/EiJ	ENSMSPG00010000880	pseudogene	Chr3:35264207-35264562 (+)
WSB/EiJ	ENSIUOG00005013765	pseudogene	Chr3:35307245-35307583 (+)

Homology

• Gene Tree
  Gm2965
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm2965
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105943 (Evidence)
• NCBI Gene
  100040785

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105943	Ensembl Gene Model | MGI Sequence Detail	343	C57BL/6J
transcript	ENSMUST00000198365	Ensembl | MGI Sequence Detail	343	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm2965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28927	Chr3:38277712-38277724 (+)	118 bp