Gm2962 Pseudogene Detail

Summary

• Symbol
  Gm2962
• Name
  predicted pseudogene 2962

• Feature Type
  pseudogene
• IDs
  MGI:3781140
  NCBI Gene: 100504052
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:170752878-170753213 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 77.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781140	pseudogene	Chr1:170752746-170753229 (-)
129S1/SvImJ	ENSMUSG00200048293	pseudogene	Chr1:168240877-168241212 (-)
A/J	ENSMUSG00195049130	pseudogene	Chr1:167553045-167553380 (-)
AKR/J	ENSMUSG00220033985	pseudogene	Chr1:167244850-167245185 (-)
BALB/cJ	ENSMUSG00180045508	pseudogene	Chr1:167812501-167812836 (-)
C3H/HeJ	ENSMUSG00175048000	pseudogene	Chr1:167896430-167896765 (-)
C57BL/6NJ	ENSMUSG00215044715	pseudogene	Chr1:167693936-167694271 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046598	pseudogene	Chr1:166210225-166210560 (-)
CBA/J	ENSMUSG00210042091	pseudogene	Chr1:167777492-167777827 (-)
DBA/2J	ENSMUSG00185012230	pseudogene	Chr1:171994496-171994831 (-)
FVB/NJ	ENSMUSG00205041252	pseudogene	Chr1:166754492-166754827 (-)
JF1/MsJ	ENSUMUG00000013983	pseudogene	Chr1:171137145-171137480 (-)
LP/J	ENSMUSG00230027555	pseudogene	Chr1:171627617-171627952 (-)
NOD/ShiLtJ	ENSMUSG00190039954	pseudogene	Chr1:167552329-167552664 (-)
NZO/HlLtJ	ENSMUSG00225005472	pseudogene	Chr1:175226840-175227175 (-)
PWK/PhJ	ENSLUMG00010036131	pseudogene	Chr1:166542402-166542737 (-)
SPRET/EiJ	ENSMSPG00010049318	pseudogene	Chr1:170097722-170098057 (-)
WSB/EiJ	ENSIUOG00005040149	pseudogene	Chr1:166954536-166954871 (-)

Homology

• Gene Tree
  Gm2962
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm2962
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089838 (Evidence)
• NCBI Gene
  100504052

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089838	Ensembl Gene Model | MGI Sequence Detail	336	C57BL/6J
transcript	ENSMUST00000159266	Ensembl | MGI Sequence Detail	336	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm2962:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14945	Chr1:170753225-170753228 (-)	-14 bp