Gm2810 Pseudogene Detail

Summary

• Symbol
  Gm2810
• Name
  predicted pseudogene 2810

• Feature Type
  pseudogene
• IDs
  MGI:3780980
  NCBI Gene: 100040502
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:40485781-40486767 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 21.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780980	pseudogene	Chr5:40485781-40486770 (+)
129S1/SvImJ	ENSMUSG00200032720	pseudogene	Chr5:35949747-35950736 (+)
A/J	ENSMUSG00195029739	pseudogene	Chr5:35389805-35390793 (+)
AKR/J	ENSMUSG00220002529	pseudogene	Chr5:35433339-35434327 (+)
BALB/cJ	ENSMUSG00180024875	pseudogene	Chr5:35192479-35193467 (+)
C3H/HeJ	ENSMUSG00175020928	pseudogene	Chr5:37182921-37183909 (+)
C57BL/6NJ	ENSMUSG00215006759	pseudogene	Chr5:35938260-35939249 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210005139	pseudogene	Chr5:36150786-36151774 (+)
DBA/2J	ENSMUSG00185017802	pseudogene	Chr5:38030184-38031173 (+)
FVB/NJ	ENSMUSG00205020111	pseudogene	Chr5:34968496-34969485 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230002637	pseudogene	Chr5:42672205-42673194 (+)
NOD/ShiLtJ	ENSMUSG00190003391	pseudogene	Chr5:35221328-35222317 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005018969	pseudogene	Chr5:38113404-38114393 (+)

Homology

• Gene Tree
  Gm2810
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm2810
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000082938 (Evidence)
• NCBI Gene
  100040502

Representative Sequences			Length	Strain/Species
genomic	100040502	NCBI Gene Model | MGI Sequence Detail	987	C57BL/6J

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105

TSS for Gm2810:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46066	Chr5:40485991-40486025 (+)	227 bp