Gm2805 Pseudogene Detail

Summary

• Symbol
  Gm2805
• Name
  predicted gene 2805

• Feature Type
  pseudogene
• IDs
  MGI:3780974
  NCBI Gene: 100040496
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:89886871-89887384 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 51.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780974	pseudogene	Chr16:89886711-89887678 (+)
129S1/SvImJ	ENSMUSG00200039071	pseudogene	Chr16:86784284-86784797 (+)
A/J	ENSMUSG00195030079	pseudogene	Chr16:86571344-86571857 (+)
AKR/J	ENSMUSG00220016439	pseudogene	Chr16:86756888-86757401 (+)
BALB/cJ	ENSMUSG00180016261	pseudogene	Chr16:86644666-86645179 (+)
C3H/HeJ	ENSMUSG00175017442	pseudogene	Chr16:86982485-86982998 (+)
C57BL/6NJ	ENSMUSG00215033857	pseudogene	Chr16:86772348-86772861 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020201	pseudogene	Chr16:86322252-86322765 (+)
CBA/J	ENSMUSG00210041851	pseudogene	Chr16:86867561-86868074 (+)
DBA/2J	ENSMUSG00185035043	pseudogene	Chr16:86815330-86815843 (+)
FVB/NJ	ENSMUSG00205030121	pseudogene	Chr16:86602566-86603079 (+)
JF1/MsJ	ENSUMUG00000045091	pseudogene	Chr16:86942621-86943134 (+)
LP/J	ENSMUSG00230035339	pseudogene	Chr16:89329934-89330447 (+)
NOD/ShiLtJ	ENSMUSG00190029603	pseudogene	Chr16:86799108-86799621 (+)
NZO/HlLtJ	ENSMUSG00225031350	pseudogene	Chr16:92477486-92477999 (+)
PWK/PhJ	ENSLUMG00010014649	pseudogene	Chr16:86570887-86571401 (+)
SPRET/EiJ	ENSMSPG00010030126	pseudogene	Chr16:87744129-87744639 (+)
WSB/EiJ	ENSIUOG00005020784	pseudogene	Chr16:86717861-86718374 (+)

Homology

• Gene Tree
  Gm2805
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  3
• Genomic Mutations
  4 involving Gm2805
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116536 (Evidence)
• NCBI Gene
  100040496

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116536	Ensembl Gene Model | MGI Sequence Detail	514	C57BL/6J
transcript	ENSMUST00000232386	Ensembl | MGI Sequence Detail	514	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:223383 Arbogast T, et al., Deletion of the App-Runx1 region in mice models human partial monosomy 21. Dis Model Mech. 2015 Jun;8(6):623-34

TSS for Gm2805:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139273	Chr16:89886814-89886819 (+)	-54 bp